Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS18105 and HMPREF1058_RS18100 overlap by 4 nucleotidesHMPREF1058_RS18100 and HMPREF1058_RS18095 are separated by 311 nucleotidesHMPREF1058_RS18095 and HMPREF1058_RS18090 overlap by 4 nucleotidesHMPREF1058_RS18090 and HMPREF1058_RS18085 are separated by 126 nucleotides HMPREF1058_RS18105: HMPREF1058_RS18105 - lactate utilization protein, at 257,856 to 259,223 _RS18105 HMPREF1058_RS18100: HMPREF1058_RS18100 - (Fe-S)-binding protein, at 259,220 to 259,960 _RS18100 HMPREF1058_RS18095: HMPREF1058_RS18095 - response regulator transcription factor, at 260,272 to 260,883 _RS18095 HMPREF1058_RS18090: HMPREF1058_RS18090 - hemerythrin domain-containing protein, at 260,880 to 261,575 _RS18090 HMPREF1058_RS18085: HMPREF1058_RS18085 - tryptophan-rich sensory protein, at 261,702 to 262,166 _RS18085
Group Condition HMPREF1058_RS18105 HMPREF1058_RS18100 HMPREF1058_RS18095 HMPREF1058_RS18090 HMPREF1058_RS18085
carbon source D-Galacturonic Acid 20 mM (C) -0.3 -0.3 +0.8 -0.9 -0.8
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.4 -1.1 +0.9 -0.6 -0.3
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.3 -0.6 +0.9 -0.8 -0.4
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.1 -0.7 +0.7 -0.4 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.4 +0.4 -0.9 -0.4 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.5 +0.2 -0.6 -0.9 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 +0.7 +0.5 -0.4 -0.9 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 +0.7 +0.6 -0.6 -0.7 -0.1
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.4 -0.6 +0.6 +0.5 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day2 +0.7 +0.5 -0.5 -0.5 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 -0.2 +0.8 +0.9 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.5 -0.4 +0.6 +1.7 +0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.1 -0.0 +0.6 +1.5 -0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.0 -0.6 +1.0 +1.2 +0.4
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 -0.3 +0.8 +1.2 +0.5
carbon source D-Glucose (C) +0.4 +0.4 +0.4 +1.0 -0.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.4 +0.3 +0.6 +1.2 -0.2
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.8 -0.3 +1.0 +0.8 -0.1
carbon source D-Galactose (C) +0.6 +0.5 +0.3 +0.7 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 -0.0 +1.1 +2.2 -0.4
carbon source D-Mannose (C) +0.4 +0.6 +0.8 +0.6 +0.1
carbon source D-Mannose 20 mM (C) +0.6 +0.5 +0.9 +0.9 -0.2
carbon source Galactose 1-phosphate dipotassium salt (C) +0.8 +0.8 +0.3 +0.5 +0.3
carbon source Galactose 1-phosphate dipotassium salt (C) +0.9 +0.5 +0.6 +0.2 +0.5
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.1 -0.1 +0.7 +2.4 +0.0
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.4 +0.4 +0.4 +2.2 -0.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.1 +0.1 +1.0 +2.7 -0.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.5 +0.5 +0.3 +2.0 +0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.1 +0.2 +0.3 +3.4 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.2 +0.3 +0.8 +3.4 -0.2
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