Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS17905 and HMPREF1058_RS17900 are separated by 20 nucleotidesHMPREF1058_RS17900 and HMPREF1058_RS17895 are separated by 104 nucleotidesHMPREF1058_RS17895 and HMPREF1058_RS17890 are separated by 119 nucleotidesHMPREF1058_RS17890 and HMPREF1058_RS17885 are separated by 143 nucleotides HMPREF1058_RS17905: HMPREF1058_RS17905 - GNAT family N-acetyltransferase, at 303,688 to 304,185 _RS17905 HMPREF1058_RS17900: HMPREF1058_RS17900 - DNA alkylation repair protein, at 304,206 to 304,922 _RS17900 HMPREF1058_RS17895: HMPREF1058_RS17895 - hypothetical protein, at 305,027 to 306,277 _RS17895 HMPREF1058_RS17890: HMPREF1058_RS17890 - DUF4301 family protein, at 306,397 to 307,914 _RS17890 HMPREF1058_RS17885: HMPREF1058_RS17885 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 308,058 to 310,271 _RS17885
Group Condition HMPREF1058_RS17905 HMPREF1058_RS17900 HMPREF1058_RS17895 HMPREF1058_RS17890 HMPREF1058_RS17885
carbon source D-Galactose 20 mM (C) -0.3 -0.1 +0.3 -1.8 -5.4
carbon source D-Galactose 20 mM (C) +0.1 +0.3 +0.0 -1.7 -5.7
carbon source D-Galactose 20 mM (C) -0.3 +0.1 -0.0 -1.4 -5.3
carbon source NAG (C) -0.2 -0.1 -0.0 -1.5 -4.9
carbon source D-Glucose 20 mM (C) -0.3 +0.1 +0.1 -0.6 -6.2
carbon source D-Glucose 20 mM (C) -0.4 +0.2 -0.3 -0.5 -5.6
carbon source D-Mannose 20 mM (C) -0.1 -0.1 -0.2 -0.2 -6.1
carbon source D-Glucose 20 mM (C) -0.3 -0.1 -0.4 +0.0 -5.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.2 +0.0 +0.2 -2.3 -4.2
carbon source NAG 20 mM (C) -0.2 -0.2 -0.1 -0.4 -5.6
carbon source NAG (C) -0.3 -0.1 +0.3 -1.5 -4.8
carbon source NAG 20 mM (C) -0.4 -0.1 +0.1 -0.2 -5.5
carbon source NAG 20 mM (C) -0.2 -0.0 +0.1 -0.4 -5.5
carbon source NAG 20 mM (C) -0.2 -0.1 -0.1 -0.5 -5.1
carbon source D-Glucose 20 mM (C) +0.0 -0.5 -0.0 +0.3 -5.8
carbon source D-Raffinose 20 mM (C) -0.3 -0.1 +0.2 -0.1 -5.5
carbon source D-Mannose (C) +0.1 +0.1 +0.1 -1.3 -4.8
carbon source D-Mannose 20 mM (C) -0.5 +0.1 +0.1 +0.2 -5.7
carbon source Sucrose 20 mM (C) -0.2 -0.1 -0.4 +0.7 -5.2
carbon source D-Mannose 20 mM (C) +0.2 -0.0 -0.2 +0.2 -5.4
carbon source D-Fructose 20 mM (C) -0.0 +0.0 -0.0 +0.6 -5.5
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.2 +0.2 +0.0 +0.4 -5.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.1 +0.1 -0.1 +0.6 -5.3
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.2 -0.1 +0.6 -5.0
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.2 -0.0 +0.0 +1.0 -5.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.1 +0.3 +0.1 +1.1 -4.8
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.5 +0.0 +0.1 +2.2 -3.8
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 +0.2 -0.1 +2.4 -3.5
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 +0.2 +0.6 +2.6 -3.9
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.7 +0.3 +0.1 +2.1 -3.2
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