Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS17710 and HMPREF1058_RS17705 are separated by 46 nucleotidesHMPREF1058_RS17705 and HMPREF1058_RS17700 are separated by 15 nucleotidesHMPREF1058_RS17700 and HMPREF1058_RS17695 are separated by 677 nucleotidesHMPREF1058_RS17695 and HMPREF1058_RS17690 are separated by 132 nucleotides HMPREF1058_RS17710: HMPREF1058_RS17710 - HAMP domain-containing histidine kinase, at 362,938 to 364,941 _RS17710 HMPREF1058_RS17705: HMPREF1058_RS17705 - J domain-containing protein, at 364,988 to 365,959 _RS17705 HMPREF1058_RS17700: HMPREF1058_RS17700 - chaperone modulator CbpM, at 365,975 to 366,262 _RS17700 HMPREF1058_RS17695: HMPREF1058_RS17695 - YihY/virulence factor BrkB family protein, at 366,940 to 368,259 _RS17695 HMPREF1058_RS17690: HMPREF1058_RS17690 - riboflavin synthase, at 368,392 to 368,994 _RS17690
Group Condition HMPREF1058_RS17710 HMPREF1058_RS17705 HMPREF1058_RS17700 HMPREF1058_RS17695 HMPREF1058_RS17690
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -1.1 -0.0 +0.9 -2.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.6 +0.1 -0.3 -1.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.5 -0.1 -0.3 -1.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.9 -0.0 +0.4 -1.5 N.D.
carbon source Pectin from citrus peel (C) +0.1 -0.0 -1.8 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.8 +0.0 -0.1 -1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 -0.3 -0.2 -0.5 -0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 -0.7 -0.0 -0.5 -0.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -1.0 +0.2 -0.3 -0.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day4 -0.7 +0.1 -0.2 -0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -0.7 +0.1 -0.1 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -0.9 +0.2 -0.1 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -0.8 -0.0 +0.1 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 -0.8 +0.1 +0.2 -1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.7 +0.3 +0.3 -1.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -1.0 +0.1 +0.6 -1.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5 -0.7 -0.0 +0.3 -0.9 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 +0.1 +0.1 -1.4 N.D.
carbon source D-Arabinose 2.5 mg/ml (C) -0.5 -0.1 +0.9 +0.4 N.D.
carbon source D-Galacturonic Acid 20 mM (C) +0.2 +0.2 -0.5 +0.9 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +1.4 -0.2 -0.2 +0.3 N.D.
carbon source D-Galactose 20 mM (C) +0.4 -0.5 +0.7 +0.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -0.2 +0.2 +1.4 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.1 -0.0 +1.6 +0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 +0.0 +0.2 +1.2 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -0.1 +0.2 +1.4 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.1 +0.1 +1.5 +0.2 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.8 -0.1 +0.7 +0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 -0.1 +0.4 +1.5 +0.2 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.8 +0.2 +1.0 +0.1 N.D.
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