Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS17680 and HMPREF1058_RS17675 are separated by 532 nucleotidesHMPREF1058_RS17675 and HMPREF1058_RS17670 are separated by 287 nucleotidesHMPREF1058_RS17670 and HMPREF1058_RS17665 overlap by 7 nucleotidesHMPREF1058_RS17665 and HMPREF1058_RS20425 overlap by 56 nucleotides HMPREF1058_RS17680: HMPREF1058_RS17680 - AMP-binding protein, at 369,781 to 371,433 _RS17680 HMPREF1058_RS17675: HMPREF1058_RS17675 - mechanosensitive ion channel, at 371,966 to 373,315 _RS17675 HMPREF1058_RS17670: HMPREF1058_RS17670 - hypothetical protein, at 373,603 to 373,806 _RS17670 HMPREF1058_RS17665: HMPREF1058_RS17665 - hypothetical protein, at 373,800 to 374,003 _RS17665 HMPREF1058_RS20425: HMPREF1058_RS20425 - left-handed beta-roll domain-containing protein, at 373,948 to 374,070 _RS20425
Group Condition HMPREF1058_RS17680 HMPREF1058_RS17675 HMPREF1058_RS17670 HMPREF1058_RS17665 HMPREF1058_RS20425
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.3 -0.4 -0.2 -1.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.2 -0.3 +1.0 -2.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.0 -0.3 +0.2 -1.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -0.5 -0.4 -0.8 +0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.6 -0.6 -0.2 -1.1 N.D.
carbon source Dextran 5 mg/ml (C) +0.3 -0.2 -0.2 -1.1 N.D.
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.6 -0.2 +0.7 -1.2 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.4 +0.3 -0.1 -1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.6 +0.0 +0.2 -0.7 N.D.
carbon source Sucrose 20 mM (C) +0.3 -0.1 -0.8 -0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.4 -0.3 -0.1 -1.0 N.D.
carbon source D-Galactose 2.5 mg/ml (C) -0.1 +0.3 -0.1 -1.0 N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.2 +0.1 +0.2 -0.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.4 -0.2 +0.1 -1.1 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 +0.6 -0.1 -1.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.2 -0.5 +0.3 -0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.1 -0.6 +0.7 -0.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -0.4 -0.6 +0.3 +0.5 N.D.
carbon source D-Galactose 20 mM (C) -0.0 +0.5 +0.3 -0.7 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -1.0 +0.0 +0.8 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.6 +0.0 +0.9 -0.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.4 -0.1 +1.0 -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.1 +0.1 +0.9 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.2 -0.7 +0.9 +0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.3 -0.3 +0.7 +0.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.2 -0.2 +1.0 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 +0.2 -0.0 +1.0 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.4 +0.1 +0.5 +0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.3 +0.2 +0.4 +0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.3 +0.3 +1.0 +0.4 N.D.
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