Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS17610 and HMPREF1058_RS17605 are separated by 39 nucleotidesHMPREF1058_RS17605 and HMPREF1058_RS17600 are separated by 132 nucleotidesHMPREF1058_RS17600 and HMPREF1058_RS17595 are separated by 191 nucleotidesHMPREF1058_RS17595 and HMPREF1058_RS17590 are separated by 24 nucleotides HMPREF1058_RS17610: HMPREF1058_RS17610 - DUF47 domain-containing protein, at 388,257 to 388,904 _RS17610 HMPREF1058_RS17605: HMPREF1058_RS17605 - DedA family protein, at 388,944 to 389,588 _RS17605 HMPREF1058_RS17600: HMPREF1058_RS17600 - hypothetical protein, at 389,721 to 390,146 _RS17600 HMPREF1058_RS17595: HMPREF1058_RS17595 - Lrp/AsnC family transcriptional regulator, at 390,338 to 390,808 _RS17595 HMPREF1058_RS17590: HMPREF1058_RS17590 - magnesium/cobalt transporter CorA, at 390,833 to 391,873 _RS17590
Group Condition HMPREF1058_RS17610 HMPREF1058_RS17605 HMPREF1058_RS17600 HMPREF1058_RS17595 HMPREF1058_RS17590
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 -1.1 -0.3 -3.9 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.0 -0.1 +0.0 -3.7 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 -0.5 -0.1 -2.7 +0.0
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 +0.2 -0.3 -2.5 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 -0.4 -0.2 -1.8 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.5 -0.3 -0.3 -1.4 +0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.3 -1.2 -1.2 +0.4 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.5 -0.2 -0.1 -1.4 -0.3
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.6 -0.4 -0.7 +0.7 +0.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.7 -0.2 +0.6 -2.3 +0.3
carbon source Galactose 1-phosphate dipotassium salt (C) +0.1 -0.1 +0.8 -1.0 -0.3
carbon source Dextran 5 mg/ml (C) -1.3 +0.1 +0.5 -0.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.5 +0.2 +0.4 -1.0 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.5 -0.7 -0.4 +0.8 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.9 -0.1 -0.9 +0.9 -0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +1.1 -0.7 -0.5 +0.3 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 +1.3 -1.2 +0.4 +0.6 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.9 -0.1 -0.2 +1.0 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.7 -0.2 -0.2 +1.1 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +1.4 -0.4 -0.4 +1.3 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +1.1 -0.2 -0.2 +1.2 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +1.7 -0.2 -0.5 +0.9 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +1.3 -0.1 +0.1 +0.7 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +1.2 -0.0 -0.3 +1.2 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +1.3 +0.0 +0.0 +1.0 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +1.6 -0.1 -0.5 +1.5 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +1.2 +0.2 +0.2 +1.1 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +1.3 +0.7 +0.0 +0.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +1.1 +0.6 +0.2 +0.8 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +1.8 -0.1 -0.2 +1.4 -0.2
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