Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS17545 and HMPREF1058_RS0119345 are separated by 6 nucleotidesHMPREF1058_RS0119345 and HMPREF1058_RS17540 overlap by 59 nucleotidesHMPREF1058_RS17540 and HMPREF1058_RS17535 are separated by 485 nucleotidesHMPREF1058_RS17535 and HMPREF1058_RS17530 are separated by 11 nucleotides HMPREF1058_RS17545: HMPREF1058_RS17545 - hypothetical protein, at 402,201 to 402,674 _RS17545 HMPREF1058_RS0119345: HMPREF1058_RS0119345 - 6-bladed beta-propeller, at 402,681 to 403,445 _RS0119345 HMPREF1058_RS17540: HMPREF1058_RS17540 - 6-bladed beta-propeller, at 403,387 to 403,839 _RS17540 HMPREF1058_RS17535: HMPREF1058_RS17535 - IS21-like element helper ATPase IstB, at 404,325 to 405,113 _RS17535 HMPREF1058_RS17530: HMPREF1058_RS17530 - IS21 family transposase, at 405,125 to 406,690 _RS17530
Group Condition HMPREF1058_RS17545 HMPREF1058_RS0119345 HMPREF1058_RS17540 HMPREF1058_RS17535 HMPREF1058_RS17530
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.0 +0.0 +0.2 -3.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -0.3 +0.3 +0.4 -3.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.4 +0.2 -0.3 -2.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 -0.2 +0.1 +0.6 -3.0 N.D.
carbon source D-Mannose 20 mM (C) -0.2 +0.3 -0.6 -2.0 N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.1 -0.3 +0.6 -2.7 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.2 -0.3 -0.6 -1.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.1 -0.0 +0.7 -3.0 N.D.
carbon source D-Galactose 20 mM (C) -0.2 +0.1 -0.0 -1.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.5 +0.2 +0.4 -3.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.0 +0.5 +0.7 -3.1 N.D.
carbon source D-Maltose 20 mM (C) -0.2 -0.1 +0.3 -1.8 N.D.
carbon source D-Glucose (C) -0.3 +0.5 +0.1 -1.9 N.D.
carbon source NAG 20 mM (C) +0.1 +0.0 +0.2 -1.9 N.D.
carbon source D-Mannose 20 mM (C) +0.2 +0.1 +0.3 -2.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.1 -0.1 +1.0 -2.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.0 +0.3 +0.7 -2.4 N.D.
carbon source D-Mannose (C) +0.4 +0.1 +0.0 -1.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.1 -0.0 +0.6 -1.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 -0.4 +0.0 +0.7 -1.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.1 +0.4 +0.6 -1.8 N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.2 +0.1 +0.7 -1.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +0.1 +0.4 +0.3 -1.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.3 -0.1 +0.9 -1.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.1 +0.3 +0.8 -1.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 +0.2 +0.4 +0.7 -1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.3 +0.5 +0.8 -0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.4 +0.5 -0.2 +1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.4 +0.3 +0.9 -0.7 N.D.
carbon source Galactose 1-phosphate dipotassium salt (C) +0.1 +0.3 +0.6 +1.2 N.D.
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HMPREF1058_RS17545
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HMPREF1058_RS0119345
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HMPREF1058_RS17535
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HMPREF1058_RS17530
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