Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS17430 and HMPREF1058_RS17425 are separated by 30 nucleotidesHMPREF1058_RS17425 and HMPREF1058_RS17420 are separated by 23 nucleotidesHMPREF1058_RS17420 and HMPREF1058_RS17415 are separated by 83 nucleotidesHMPREF1058_RS17415 and HMPREF1058_RS17410 are separated by 267 nucleotides HMPREF1058_RS17430: HMPREF1058_RS17430 - DUF3868 domain-containing protein, at 444,948 to 446,357 _RS17430 HMPREF1058_RS17425: HMPREF1058_RS17425 - Mfa1 family fimbria major subunit, at 446,388 to 447,926 _RS17425 HMPREF1058_RS17420: HMPREF1058_RS17420 - FimB/Mfa2 family fimbrial subunit, at 447,950 to 448,897 _RS17420 HMPREF1058_RS17415: HMPREF1058_RS17415 - site-specific integrase, at 448,981 to 449,922 _RS17415 HMPREF1058_RS17410: HMPREF1058_RS17410 - undecaprenyl-phosphate glucose phosphotransferase, at 450,190 to 451,593 _RS17410
Group Condition HMPREF1058_RS17430 HMPREF1058_RS17425 HMPREF1058_RS17420 HMPREF1058_RS17415 HMPREF1058_RS17410
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.6 -0.3 -0.9 +0.1 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.2 +0.1 -0.8 -0.8 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.5 +0.1 -0.8 -0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -0.4 +0.4 -0.5 -0.5 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.6 -0.2 -0.3 +0.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.3 -0.4 -0.2 +0.1 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.5 -0.1 -0.2 +0.1 +1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.3 +0.2 -0.7 +0.1 +0.7
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.4 +0.6 -0.4 +0.2 -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.6 +0.5 +0.8 +0.2 -0.2
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.4 +1.0 +0.0 +0.1 -0.6
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) +0.7 +0.7 -0.5 -0.1 +0.2
carbon source Arabinan from sugar beet 5mg/ml (C) +0.6 +0.5 -0.1 +0.4 -0.3
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.6 +0.7 -0.0 +0.3 -0.4
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.6 +0.1 +1.0 +0.1 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.3 +0.9 +0.8 +0.2 -0.2
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.0 +0.5 +1.0 +0.6 -0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.3 +0.7 +0.9 +0.5 -0.4
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.3 +0.8 +1.1 +0.7 -0.4
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.5 +0.9 +0.9 +0.4 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.8 +0.7 +0.9 +0.3 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.0 +1.2 +1.0 +0.6 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.4 +0.8 +1.1 +0.8 -0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 +1.1 +1.1 +0.8 -0.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.3 +0.7 +1.2 +0.7 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.6 +0.9 +1.0 +0.8 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.4 +1.0 +1.4 +0.8 -0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.5 +1.2 +1.3 +0.7 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.4 +1.8 +1.8 +1.2 -0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.6 +1.4 +1.6 +1.2 +0.1
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HMPREF1058_RS17430
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HMPREF1058_RS17425
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HMPREF1058_RS17415
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HMPREF1058_RS17410
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