Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 297 experiments or choose conditions or try the comparative fitness browser

500 ntHMPREF1058_RS17390 and HMPREF1058_RS17385 are separated by 248 nucleotidesHMPREF1058_RS17385 and HMPREF1058_RS17380 are separated by 150 nucleotidesHMPREF1058_RS17380 and HMPREF1058_RS17375 are separated by 198 nucleotidesHMPREF1058_RS17375 and HMPREF1058_RS17370 are separated by 277 nucleotides HMPREF1058_RS17390: HMPREF1058_RS17390 - HU family DNA-binding protein, at 455,551 to 455,979 _RS17390 HMPREF1058_RS17385: HMPREF1058_RS17385 - DUF4248 domain-containing protein, at 456,228 to 456,458 _RS17385 HMPREF1058_RS17380: HMPREF1058_RS17380 - DUF3987 domain-containing protein, at 456,609 to 458,987 _RS17380 HMPREF1058_RS17375: HMPREF1058_RS17375 - hypothetical protein, at 459,186 to 459,383 _RS17375 HMPREF1058_RS17370: HMPREF1058_RS17370 - UpxY family transcription antiterminator, at 459,661 to 460,161 _RS17370
Group Condition HMPREF1058_RS17390 HMPREF1058_RS17385 HMPREF1058_RS17380 HMPREF1058_RS17375 HMPREF1058_RS17370
carbon source D-Glucose 5 mg/ml (C) -0.7 -2.2 -0.7 N.D. -0.9
carbon source (+)-Arabinogalactan 5 mg/ml (C) -2.6 -1.1 +0.2 N.D. -0.8
carbon source Galactose 1-phosphate dipotassium salt (C) -1.7 -0.2 -0.9 N.D. -0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -1.1 -1.8 -0.2 N.D. -0.0
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -1.3 -1.5 -0.0 N.D. -0.3
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -1.7 -0.6 -0.3 N.D. -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -2.9 +0.5 -0.0 N.D. -0.4
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) -1.8 -0.4 -1.0 N.D. +0.2
carbon source Pectic galactan from potato 5mg/ml (C) -1.6 -1.2 +0.4 N.D. -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -2.1 -0.7 -0.1 N.D. +0.0
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.0 -1.7 +0.0 N.D. +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -1.3 -1.8 +0.3 N.D. +0.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -1.2 -1.1 -0.4 N.D. +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -1.2 -1.5 +0.1 N.D. +0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.3 -0.7 -1.4 N.D. -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -1.6 -0.6 -0.2 N.D. +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -1.7 -1.1 -0.1 N.D. +1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -1.6 -0.5 -0.3 N.D. +0.9
carbon source NAG 2.5 mg/ml (C) -0.6 -1.5 +0.1 N.D. +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -1.1 -0.9 -0.4 N.D. +1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -1.0 -1.1 +0.4 N.D. +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -2.1 -0.1 -0.2 N.D. +1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 -1.2 -0.5 -0.1 N.D. +1.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -1.1 +1.1 +0.5 N.D. -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -1.3 -0.2 -0.0 N.D. +1.4
carbon source Amylose from potato 5 mg/ml (C) -1.1 +0.7 +1.0 N.D. -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -1.5 +0.3 +0.8 N.D. +0.7
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.8 +2.7 -0.1 N.D. -0.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +2.3 +0.3 -0.3 N.D. -0.9
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.7 +1.2 +1.0 N.D. -0.5
remove
HMPREF1058_RS17390
plot		 remove
HMPREF1058_RS17385
plot		 remove
HMPREF1058_RS17380		 remove
HMPREF1058_RS17375
plot		 remove
HMPREF1058_RS17370
plot