Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS17370 and HMPREF1058_RS17365 are separated by 67 nucleotidesHMPREF1058_RS17365 and HMPREF1058_RS17360 are separated by 527 nucleotidesHMPREF1058_RS17360 and HMPREF1058_RS17355 are separated by 362 nucleotidesHMPREF1058_RS17355 and HMPREF1058_RS17350 are separated by 12 nucleotides HMPREF1058_RS17370: HMPREF1058_RS17370 - UpxY family transcription antiterminator, at 459,661 to 460,161 _RS17370 HMPREF1058_RS17365: HMPREF1058_RS17365 - nucleotidyltransferase domain-containing protein, at 460,229 to 460,519 _RS17365 HMPREF1058_RS17360: HMPREF1058_RS17360 - hypothetical protein, at 461,047 to 462,564 _RS17360 HMPREF1058_RS17355: HMPREF1058_RS17355 - glycosyltransferase family 4 protein, at 462,927 to 464,015 _RS17355 HMPREF1058_RS17350: HMPREF1058_RS17350 - hypothetical protein, at 464,028 to 465,281 _RS17350
Group Condition HMPREF1058_RS17370 HMPREF1058_RS17365 HMPREF1058_RS17360 HMPREF1058_RS17355 HMPREF1058_RS17350
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.9 -2.1 +0.1 -0.5 -0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.9 -1.3 -0.3 -0.3 -0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.9 -0.9 -0.1 -0.7 -0.4
carbon source D-Galactose 20 mM (C) -0.2 -1.8 -0.0 -0.3 -0.6
carbon source Polygalacturonic ultrapure 5mg/ml (C) -0.8 -0.4 -0.4 -0.6 -0.6
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.5 -1.7 +0.1 -0.5 -0.1
carbon source Sucrose 20 mM (C) -1.2 -0.9 -0.0 -0.5 +0.2
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.0 -2.1 +0.1 -0.3 -0.1
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) +0.0 -0.8 -0.5 -0.6 -0.5
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.0 -2.0 -0.0 +0.1 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +1.0 -1.1 -0.2 -0.4 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.2 +0.7 +0.3 -0.9 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +1.3 -0.6 -0.1 -0.3 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.0 -1.3 +0.3 +0.7 +0.4
carbon source D-Galacturonic Acid 20 mM (C) +1.1 -0.9 +0.1 +0.2 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 -0.6 -0.1 +0.5 +0.5 +0.4
carbon source Dextran 5 mg/ml (C) +0.4 -0.7 +0.4 +0.4 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +1.4 +0.4 +0.0 -0.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.3 -0.5 +0.4 +0.7 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +1.0 +0.6 +0.2 -0.1 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.4 -0.4 +0.7 +0.6 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.2 +0.0 +0.7 +0.7 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.6 +0.1 +0.5 +0.6 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.3 +0.4 +0.6 +0.4 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.5 +1.4 +0.4 -0.0 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.1 +0.0 +0.8 +0.9 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.3 +1.1 +0.6 +0.4 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.6 +0.4 +0.5 +0.7 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.6 +1.3 +0.5 +0.4 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.8 +1.6 +0.9 +0.7 +0.4
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HMPREF1058_RS17370
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HMPREF1058_RS17350
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