Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS17200 and HMPREF1058_RS17195 are separated by 1 nucleotidesHMPREF1058_RS17195 and HMPREF1058_RS17190 overlap by 53 nucleotidesHMPREF1058_RS17190 and HMPREF1058_RS17185 are separated by 3 nucleotidesHMPREF1058_RS17185 and HMPREF1058_RS17180 are separated by 13 nucleotides HMPREF1058_RS17200: HMPREF1058_RS17200 - glycosyltransferase family 2 protein, at 505,108 to 506,061 _RS17200 HMPREF1058_RS17195: HMPREF1058_RS17195 - hypothetical protein, at 506,063 to 506,611 _RS17195 HMPREF1058_RS17190: HMPREF1058_RS17190 - hypothetical protein, at 506,559 to 507,260 _RS17190 HMPREF1058_RS17185: HMPREF1058_RS17185 - manganese efflux pump, at 507,264 to 507,836 _RS17185 HMPREF1058_RS17180: HMPREF1058_RS17180 - FAD:protein FMN transferase, at 507,850 to 508,866 _RS17180
Group Condition HMPREF1058_RS17200 HMPREF1058_RS17195 HMPREF1058_RS17190 HMPREF1058_RS17185 HMPREF1058_RS17180
carbon source D-Glucose (C) N.D. -0.3 -2.9 -1.1 N.D.
carbon source Sucrose 20 mM (C) N.D. -0.6 -1.3 -2.4 N.D.
carbon source D-Galactose 20 mM (C) N.D. -1.2 -0.7 -1.7 N.D.
carbon source Polygalacturonic 5 mg/ml (C) N.D. -2.0 -0.7 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. -1.5 -1.8 -0.1 N.D.
carbon source D-Glucose (C) N.D. +0.1 -2.4 -1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 N.D. -2.2 -0.7 +0.0 N.D.
carbon source D-Glucose 5 mg/ml (C) N.D. -0.0 -1.8 -1.1 N.D.
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) N.D. -1.3 -0.5 -1.0 N.D.
carbon source D-Glucose 5 mg/ml (C) N.D. -0.6 -1.2 -1.0 N.D.
carbon source D-Galactose 20 mM (C) N.D. -1.1 +0.1 -1.8 N.D.
carbon source Polygalacturonic 5 mg/ml (C) N.D. -0.6 -1.2 -1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. -0.9 -1.3 -0.4 N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. -0.5 -1.0 -1.2 N.D.
carbon source D-Galactose 20 mM (C) N.D. -0.5 -0.7 -1.5 N.D.
carbon source NAG (C) N.D. +0.1 -1.6 -1.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 N.D. -1.2 -1.4 +0.0 N.D.
carbon source NAG (C) N.D. +0.3 -1.6 -1.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 N.D. -1.5 -0.6 -0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 N.D. -2.0 -0.3 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 N.D. -1.0 -0.9 -0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -0.8 -1.3 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. -1.0 -1.4 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -0.6 -1.2 -0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 N.D. -1.3 -1.0 -0.0 N.D.
carbon source a-Cyclodextrin (C) N.D. +0.3 -1.4 -1.1 N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. +0.2 -1.2 -1.0 N.D.
carbon source a-Cyclodextrin (C) N.D. +0.7 -1.6 -1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 N.D. -1.7 -0.4 +0.4 N.D.
carbon source D-Galactose (C) N.D. +0.5 -1.9 +0.0 N.D.
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