Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 297 experiments or choose conditions or try the comparative fitness browser

500 ntHMPREF1058_RS17040 and HMPREF1058_RS17035 are separated by 41 nucleotidesHMPREF1058_RS17035 and HMPREF1058_RS17030 are separated by 26 nucleotidesHMPREF1058_RS17030 and HMPREF1058_RS17025 are separated by 25 nucleotidesHMPREF1058_RS17025 and HMPREF1058_RS17020 are separated by 86 nucleotides HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512 _RS17040 HMPREF1058_RS17035: HMPREF1058_RS17035 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 532,554 to 533,654 _RS17035 HMPREF1058_RS17030: HMPREF1058_RS17030 - DUF4837 family protein, at 533,681 to 534,745 _RS17030 HMPREF1058_RS17025: HMPREF1058_RS17025 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 534,771 to 535,820 _RS17025 HMPREF1058_RS17020: HMPREF1058_RS17020 - DUF4922 domain-containing protein, at 535,907 to 538,378 _RS17020
Group Condition HMPREF1058_RS17040 HMPREF1058_RS17035 HMPREF1058_RS17030 HMPREF1058_RS17025 HMPREF1058_RS17020
carbon source a-Cyclodextrin (C) -4.2 -4.6 N.D. -0.9 -0.3
carbon source Beta-Lactose 20 mM (C) -3.4 -4.2 N.D. -1.5 -0.4
carbon source D-Galactose 20 mM (C) -3.1 -4.5 N.D. -1.6 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -3.8 -1.1 N.D. -4.2 -0.2
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -3.7 -4.9 N.D. -0.7 +0.0
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -4.1 -4.3 N.D. -0.8 -0.0
carbon source D-Glucose 20 mM (C) -3.6 -4.3 N.D. -1.1 -0.0
carbon source D-Maltose 20 mM (C) -2.0 -5.2 N.D. -1.7 -0.1
carbon source a-Cyclodextrin (C) -3.5 -4.0 N.D. -0.9 -0.4
carbon source D-Galactose 20 mM (C) -4.1 -3.8 N.D. -1.2 +0.3
carbon source Inulin from chicory; autoclaved 2.5 mg/ml (C) -3.3 -4.6 N.D. -0.8 -0.1
carbon source Inulin from chicory; autoclaved 2.5 mg/ml (C) -3.6 -3.9 N.D. -1.1 -0.1
carbon source D-Xylose 2.5 mg/ml (C) -3.8 -3.5 N.D. -1.1 -0.1
carbon source D-Galactose (C) -4.0 -4.2 N.D. -0.0 -0.2
carbon source D-Raffinose 20 mM (C) -3.3 -4.4 N.D. -0.4 -0.2
carbon source Sucrose 20 mM (C) -3.2 -3.7 N.D. -1.1 -0.2
carbon source D-Glucose 5 mg/ml (C) -3.1 -3.7 N.D. -1.3 -0.1
carbon source D-Maltose 20 mM (C) -2.2 -4.6 N.D. -1.4 -0.1
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -3.1 -3.7 N.D. -1.5 +0.0
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -2.5 -4.5 N.D. -1.0 -0.1
carbon source Beta-Lactose 20 mM (C) -2.4 -4.5 N.D. -1.2 +0.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) -3.3 -3.6 N.D. -1.0 -0.1
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) -3.3 -3.9 N.D. -0.9 +0.0
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -2.5 -3.9 N.D. -1.6 -0.1
carbon source D-Fructose 20 mM (C) -2.9 -4.0 N.D. -0.8 -0.3
carbon source a-Cyclodextrin 2.5 mg/ml (C) -3.1 -3.4 N.D. -1.4 -0.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -2.8 -3.3 N.D. -1.7 -0.1
carbon source NAG (C) -3.4 -4.0 N.D. -0.6 +0.1
carbon source D-Galactose (C) -3.9 -4.6 N.D. +0.9 -0.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -3.1 -3.7 N.D. -0.9 +0.2
remove
HMPREF1058_RS17040
plot		 remove
HMPREF1058_RS17035
plot		 remove
HMPREF1058_RS17030		 remove
HMPREF1058_RS17025
plot		 remove
HMPREF1058_RS17020
plot