Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS16715 and HMPREF1058_RS16710 are separated by 205 nucleotidesHMPREF1058_RS16710 and HMPREF1058_RS16705 are separated by 356 nucleotidesHMPREF1058_RS16705 and HMPREF1058_RS16700 are separated by 4 nucleotidesHMPREF1058_RS16700 and HMPREF1058_RS16695 are separated by 102 nucleotides HMPREF1058_RS16715: HMPREF1058_RS16715 - hypothetical protein, at 611,501 to 611,749 _RS16715 HMPREF1058_RS16710: HMPREF1058_RS16710 - hypothetical protein, at 611,955 to 612,278 _RS16710 HMPREF1058_RS16705: HMPREF1058_RS16705 - xanthine phosphoribosyltransferase, at 612,635 to 613,201 _RS16705 HMPREF1058_RS16700: HMPREF1058_RS16700 - purine permease, at 613,206 to 614,537 _RS16700 HMPREF1058_RS16695: HMPREF1058_RS16695 - phosphotransferase, at 614,640 to 616,070 _RS16695
Group Condition HMPREF1058_RS16715 HMPREF1058_RS16710 HMPREF1058_RS16705 HMPREF1058_RS16700 HMPREF1058_RS16695
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.7 -1.0 +0.8 +0.4 -3.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 -1.2 -0.3 -0.4 +0.0 -1.0
carbon source D-Mannose (C) -0.6 +0.2 -0.2 -0.3 -1.6
carbon source NAG (C) -0.5 +0.2 +0.1 -0.1 -2.2
carbon source D-Galacturonic Acid 20 mM (C) +0.0 -0.1 -0.3 -0.2 -1.8
carbon source Pectic galactan from potato 5mg/ml (C) -0.7 -0.4 +0.0 +0.1 -1.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.1 +0.3 -0.4 +0.4 -1.2
carbon source D-Glucose (C) -0.0 +0.1 -0.5 +0.1 -1.5
carbon source D-Galactose (C) -0.8 +0.0 -0.3 +0.3 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.8 -0.5 +0.9 +0.3 -1.5
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.2 -0.1 -0.1 +0.2 -1.7
carbon source Dextrin from potato starch 5 mg/ml (C) -1.8 -0.1 +0.3 +0.3 -0.3
carbon source NAG (C) +0.3 +0.1 +0.2 +0.1 -1.9
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.8 -0.1 +0.5 +0.0 -0.9
carbon source D-Xylose 20 mM (C) -0.9 -0.2 +0.4 +0.2 -0.7
carbon source D-Mannose (C) +0.3 +0.1 -0.1 +0.1 -1.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.6 -0.5 -0.2 -0.4 -0.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.6 -0.2 +0.3 +0.4 -0.9
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.6 +0.2 +0.5 +0.3 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.3 -0.5 +0.7 +0.4 -1.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.5 +0.0 +0.5 +0.7 -1.2
carbon source D-Galactose (C) +0.8 +0.3 -0.5 -0.2 -0.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 -0.1 +0.3 +0.8 -1.0
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.7 +0.2 +0.5 +0.3 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.8 -0.4 +0.4 +0.2 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.2 -0.9 +0.7 +0.6 -0.0
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.4 +0.4 +0.3 +0.4 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.4 -0.7 +0.8 +0.6 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.8 -0.0 +0.6 +0.1 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.1 -0.8 +0.7 +0.8 +0.3
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HMPREF1058_RS16715
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HMPREF1058_RS16710
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HMPREF1058_RS16700
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HMPREF1058_RS16695
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