Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS16605 and HMPREF1058_RS16600 are separated by 27 nucleotidesHMPREF1058_RS16600 and HMPREF1058_RS16595 overlap by 17 nucleotidesHMPREF1058_RS16595 and HMPREF1058_RS16590 are separated by 20 nucleotidesHMPREF1058_RS16590 and HMPREF1058_RS16585 are separated by 38 nucleotides HMPREF1058_RS16605: HMPREF1058_RS16605 - ABC transporter ATP-binding protein, at 636,504 to 637,391 _RS16605 HMPREF1058_RS16600: HMPREF1058_RS16600 - PepSY-associated TM helix domain-containing protein, at 637,419 to 637,994 _RS16600 HMPREF1058_RS16595: HMPREF1058_RS16595 - hypothetical protein, at 637,978 to 638,562 _RS16595 HMPREF1058_RS16590: HMPREF1058_RS16590 - hypothetical protein, at 638,583 to 640,133 _RS16590 HMPREF1058_RS16585: HMPREF1058_RS16585 - DUF4876 domain-containing protein, at 640,172 to 641,386 _RS16585
Group Condition HMPREF1058_RS16605 HMPREF1058_RS16600 HMPREF1058_RS16595 HMPREF1058_RS16590 HMPREF1058_RS16585
carbon source Amylose from potato 5 mg/ml (C) -0.0 +0.1 -1.5 -0.2 +0.1
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.1 -0.1 -1.1 +0.2 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.6 -0.5 -0.6 +0.2 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 -0.1 +0.2 -1.3 -0.0 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -0.3 +0.2 -1.1 -0.0 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 -0.1 +0.4 -1.9 +0.2 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -0.4 +0.4 -0.9 -0.1 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 -0.3 +0.2 -1.1 +0.0 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -0.2 -0.5 -0.7 +0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 -0.6 +0.4 -0.6 -0.2 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.0 +0.1 -1.4 +0.4 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 -0.4 +0.5 -1.0 -0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -0.4 +0.2 -0.9 -0.2 +0.2
carbon source Pectic galactan from potato 5mg/ml (C) +0.1 +0.3 -0.9 -0.1 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 -0.8 +0.6 -0.6 -0.1 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -0.4 +0.4 -0.7 -0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 -0.5 +0.5 -1.0 +0.1 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.1 -1.2 +0.7 -0.3 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.1 +0.2 -1.3 +0.2 +0.2
carbon source Pectin from citrus peel (C) -0.1 +0.8 -1.1 +0.1 -0.2
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.2 +0.5 -0.9 -0.2 -0.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.3 -0.2 -0.8 +0.3 -0.1
carbon source Pectin from citrus peel (C) +0.0 +0.7 -0.8 -0.1 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.4 -0.1 -0.9 +0.1 +0.3
carbon source Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) +0.3 +0.7 -0.8 -0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.2 +0.4 -0.7 +0.4 -0.1
carbon source D-Galacturonic Acid 20 mM (C) +0.8 +0.3 -0.5 -0.2 +0.1
carbon source D-Mannose (C) +0.1 -0.4 +1.1 -0.1 +0.0
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.8 +0.2 +0.6 +0.1 +0.2
carbon source Sucrose 20 mM (C) +0.6 +0.3 +1.0 +0.0 -0.1
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