Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS16420	HMPREF1058_RS16415	HMPREF1058_RS16410	HMPREF1058_RS16405	HMPREF1058_RS16400
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	-3.7	-0.0	-0.1	-0.3	-0.5
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen	+0.0	+0.0	-4.1	-0.0	-0.3
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen	-0.0	-0.2	-3.5	-0.1	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6	-2.9	-0.2	+0.0	-0.3	-0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	-2.5	-0.0	-0.4	+0.4	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6	-2.7	+0.3	-0.1	-0.4	-0.3
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen	+0.0	-0.1	-3.4	+0.0	+0.2
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen	+0.1	-0.1	-3.5	-0.0	+0.4
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.2	+0.4	-3.9	-0.6	+1.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5	-2.3	+0.2	-0.2	-0.0	-0.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5	-2.1	-0.3	+0.2	+0.3	-0.9
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen	+0.1	-0.0	-3.4	+0.1	+0.7
carbon source	D-Mannose (C)	-0.1	-0.3	-1.8	-0.6	+0.3
carbon source	beta-Cyclodextrin 2.5 mg/ml (C)	-0.1	+0.3	-0.4	-0.0	-2.3
carbon source	Polygalacturonic 5 mg/ml (C)	+0.1	+0.3	-0.2	+0.0	-2.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	-2.0	+0.1	-0.3	+0.6	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	-1.8	-0.0	-0.1	+0.4	-0.8
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen	-0.1	-0.2	-3.0	+0.4	+0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14	-0.7	+0.4	-0.1	+0.4	-1.9
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	+0.1	-0.4	+0.2	+0.6	-2.1
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.0	-0.1	-3.1	-0.2	+2.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9	+0.9	+0.5	-0.3	+0.0	-0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7	+1.6	+0.3	-0.3	+0.1	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9	+1.6	+0.4	-0.3	+0.1	-0.6
carbon source	polygalacturonic 2.5 mg/ml (C)	+0.2	+0.7	+0.6	+0.9	-1.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9	+1.5	+0.5	+0.1	+0.1	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7	+1.7	+0.4	-0.3	+0.6	-0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5	+1.5	+0.2	-0.1	+0.6	-0.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9	+1.5	+0.5	-0.0	+0.6	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6	+1.6	+0.4	-0.2	+0.7	-0.6