Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS16170 and HMPREF1058_RS16165 overlap by 1 nucleotidesHMPREF1058_RS16165 and HMPREF1058_RS16160 overlap by 4 nucleotidesHMPREF1058_RS16160 and HMPREF1058_RS16155 overlap by 4 nucleotidesHMPREF1058_RS16155 and HMPREF1058_RS16150 overlap by 4 nucleotides HMPREF1058_RS16170: HMPREF1058_RS16170 - glycosyltransferase, at 739,618 to 740,796 _RS16170 HMPREF1058_RS16165: HMPREF1058_RS16165 - glycoside hydrolase family 16 protein, at 740,796 to 741,560 _RS16165 HMPREF1058_RS16160: HMPREF1058_RS16160 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 741,557 to 742,744 _RS16160 HMPREF1058_RS16155: HMPREF1058_RS16155 - polysaccharide pyruvyl transferase family protein, at 742,741 to 743,916 _RS16155 HMPREF1058_RS16150: HMPREF1058_RS16150 - glycosyltransferase, at 743,913 to 744,956 _RS16150
Group Condition HMPREF1058_RS16170 HMPREF1058_RS16165 HMPREF1058_RS16160 HMPREF1058_RS16155 HMPREF1058_RS16150
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -1.5 -0.8 -0.2 -2.2 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -1.5 -0.6 -0.8 -1.7 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -1.7 -1.2 -0.4 -2.5 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -1.4 -1.0 -0.4 -2.0 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -1.5 -1.1 -0.6 -2.0 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -1.8 -1.1 -0.5 -2.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -1.3 -0.3 -0.3 -2.8 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -1.9 -0.7 +0.1 -2.1 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -1.2 -0.8 -0.1 -2.4 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -1.3 -1.1 -0.7 -1.7 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 -1.2 -0.7 -0.4 -2.0 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -1.3 -0.4 -0.2 -2.2 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 -1.1 -0.6 -0.0 -2.0 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2 -0.6 -0.6 -0.3 -1.8 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -1.2 -0.8 +0.0 -2.0 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -0.9 -0.7 -0.1 -2.0 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.7 -0.9 -0.1 -1.5 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3 -1.0 -0.4 -0.1 -2.0 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 -1.1 -0.2 +0.2 -2.1 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -1.0 -0.7 -0.0 -2.3 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.9 -0.2 -0.3 -1.8 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -1.1 -0.5 +0.1 -2.0 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 -0.9 -0.6 -0.4 -1.8 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -1.0 -0.3 -0.2 -2.0 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 -1.0 -0.4 -0.3 -1.6 -0.6
carbon source Polygalacturonic 5 mg/ml (C) +0.9 +0.7 +0.5 +0.6 +1.5
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.4 +0.9 +1.1 +1.1 +1.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +2.2 +1.9 +1.3 +2.4 +2.5
carbon source Pectic galactan from potato 5mg/ml (C) +2.4 +2.1 +1.6 +2.8 +2.3
carbon source Pectic galactan from potato 5mg/ml (C) +2.7 +2.1 +1.5 +3.0 +2.1
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HMPREF1058_RS16170
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HMPREF1058_RS16165
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HMPREF1058_RS16155
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HMPREF1058_RS16150
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