Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS0119365	HMPREF1058_RS16090	HMPREF1058_RS16085	HMPREF1058_RS16080	HMPREF1058_RS16075
carbon source	Pectin from apple; autoclaved 2.5 mg/ml (C)	-0.7	-0.0	-0.2	+0.1	+0.3
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.1	-0.4	-0.2	-0.1	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	-0.3	+0.4	+0.1	+0.0	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9	-0.4	+0.2	-0.4	+0.4	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3	-0.6	+0.3	-0.0	+0.1	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	-0.9	+0.4	-0.1	+0.1	+0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9	-0.3	+0.1	-0.3	+0.4	+0.1
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.3	-0.7	-0.4	+0.3	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2	-0.3	+0.3	-0.1	+0.2	+0.3
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	+0.4	-0.1	+0.4	+0.0	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4	-0.2	+0.2	-0.2	+0.1	+0.6
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	+0.4	-0.3	+0.2	-0.0	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7	+0.4	+0.2	-0.3	+0.2	+0.2
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	+0.4	-0.2	+0.3	-0.1	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	+0.1	+0.2	-0.3	+0.2	+0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5	-0.3	+0.3	-0.1	+0.0	+0.8
carbon source	(+)-Arabinogalactan; filtered 2.5 mg/ml (C)	+0.4	-0.2	+0.3	+0.1	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2	+0.0	+0.3	-0.1	+0.1	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3	-0.1	+0.2	+0.0	+0.1	+0.7
carbon source	D-Glucose 5 mg/ml (C)	+0.5	-0.2	+0.3	+0.2	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	+0.3	+0.5	-0.1	+0.2	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	+0.3	-0.1	+0.1	+0.0	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	-0.0	+0.2	+0.0	-0.1	+0.9
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3	+0.3	+0.5	-0.3	+0.4	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	-0.1	+0.4	-0.0	+0.1	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6	-0.5	+0.5	+0.0	+0.2	+1.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4	-0.1	+0.4	+0.0	+0.2	+0.7
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.6	-0.1	+0.2	+0.4	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	-0.0	+0.5	+0.4	+0.2	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	+0.1	+0.6	-0.0	+0.4	+0.6