Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS16085 and HMPREF1058_RS16080 overlap by 1 nucleotidesHMPREF1058_RS16080 and HMPREF1058_RS16075 are separated by 90 nucleotidesHMPREF1058_RS16075 and HMPREF1058_RS16070 are separated by 4 nucleotidesHMPREF1058_RS16070 and HMPREF1058_RS16065 are separated by 2 nucleotides HMPREF1058_RS16085: HMPREF1058_RS16085 - hypothetical protein, at 760,976 to 762,733 _RS16085 HMPREF1058_RS16080: HMPREF1058_RS16080 - SIR2 family protein, at 762,733 to 766,209 _RS16080 HMPREF1058_RS16075: HMPREF1058_RS16075 - hypothetical protein, at 766,300 to 767,286 _RS16075 HMPREF1058_RS16070: HMPREF1058_RS16070 - helix-turn-helix transcriptional regulator, at 767,291 to 767,578 _RS16070 HMPREF1058_RS16065: HMPREF1058_RS16065 - DUF1016 family protein, at 767,581 to 768,639 _RS16065
Group Condition HMPREF1058_RS16085 HMPREF1058_RS16080 HMPREF1058_RS16075 HMPREF1058_RS16070 HMPREF1058_RS16065
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.0 +0.2 -0.3 -3.3 -1.9
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.0 +0.3 -0.1 -2.1 -2.4
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.0 +0.1 -0.2 -2.4 -1.5
carbon source D-Maltose 20 mM (C) -0.1 -0.1 -0.1 -2.5 -0.9
carbon source Dextrin from potato starch 5 mg/ml (C) -0.1 +0.0 -0.0 -2.3 -1.3
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.0 -0.0 -0.2 -2.3 -1.1
carbon source D-Galacturonic Acid 20 mM (C) +0.1 -0.0 -0.4 -2.6 -0.6
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.1 -0.0 -0.2 -2.4 -0.8
carbon source D-Maltose 20 mM (C) +0.0 +0.1 -0.2 -1.9 -1.2
carbon source NAG 20 mM (C) -0.1 +0.1 -0.4 -1.5 -1.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 +0.1 +0.2 -1.6 -1.3
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.1 +0.1 -0.4 -2.0 -0.5
carbon source D-Maltose 20 mM (C) +0.0 +0.0 -0.2 -1.4 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.1 +0.3 +0.2 -2.4 -0.9
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.0 +0.1 -0.2 -1.4 -1.3
carbon source Pectic galactan from potato 5mg/ml (C) -0.0 +0.2 +0.1 -1.5 -1.4
carbon source Pectic galactan from potato 5mg/ml (C) -0.0 +0.1 +0.1 -1.9 -0.8
carbon source a-Cyclodextrin (C) +0.1 +0.0 +0.2 -1.6 -1.3
carbon source NAG 20 mM (C) +0.0 +0.1 -0.5 -1.1 -1.0
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -0.2 -0.0 +0.0 -1.4 -0.9
carbon source D-Maltose 20 mM (C) -0.1 +0.1 +0.2 -1.5 -1.2
carbon source Dextrin from potato starch 5 mg/ml (C) +0.1 +0.1 +0.1 -1.9 -0.9
carbon source Arabinan from sugar beet 5mg/ml (C) +0.2 +0.1 +0.2 -1.4 -1.2
carbon source Arabinan from sugar beet 5mg/ml (C) +0.2 +0.3 +0.0 -1.6 -1.0
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) -0.0 +0.2 +0.1 -1.6 -0.8
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.2 +0.0 -0.0 -1.8 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.4 +0.4 +0.1 -1.4 -0.6
carbon source a-Cyclodextrin (C) +0.2 +0.2 +0.1 -1.2 -1.2
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.4 +0.0 -0.3 -1.4 -0.7
carbon source NAG (C) +0.1 +0.3 +0.3 -1.1 -0.8
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