Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS15695 and HMPREF1058_RS15690 are separated by 188 nucleotidesHMPREF1058_RS15690 and HMPREF1058_RS15685 are separated by 177 nucleotidesHMPREF1058_RS15685 and HMPREF1058_RS15680 are separated by 19 nucleotidesHMPREF1058_RS15680 and HMPREF1058_RS15675 are separated by 94 nucleotides HMPREF1058_RS15695: HMPREF1058_RS15695 - SGNH/GDSL hydrolase family protein, at 853,877 to 855,388 _RS15695 HMPREF1058_RS15690: HMPREF1058_RS15690 - ATP-binding cassette domain-containing protein, at 855,577 to 857,196 _RS15690 HMPREF1058_RS15685: HMPREF1058_RS15685 - nucleotide exchange factor GrpE, at 857,374 to 857,994 _RS15685 HMPREF1058_RS15680: HMPREF1058_RS15680 - molecular chaperone DnaJ, at 858,014 to 859,189 _RS15680 HMPREF1058_RS15675: HMPREF1058_RS15675 - bifunctional folylpolyglutamate synthase/dihydrofolate synthase, at 859,284 to 860,570 _RS15675
Group Condition HMPREF1058_RS15695 HMPREF1058_RS15690 HMPREF1058_RS15685 HMPREF1058_RS15680 HMPREF1058_RS15675
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.0 -1.1 N.D. N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 -0.8 N.D. N.D. N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 -0.7 N.D. N.D. N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.3 -0.6 N.D. N.D. N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 -0.7 N.D. N.D. N.D.
carbon source Pectin from citrus peel (C) +0.3 -0.4 N.D. N.D. N.D.
carbon source D-Fructose 20 mM (C) -0.2 +0.6 N.D. N.D. N.D.
carbon source D-Mannose 20 mM (C) -0.1 +0.7 N.D. N.D. N.D.
carbon source D-Glucose 20 mM (C) -0.1 +0.7 N.D. N.D. N.D.
carbon source D-Glucose 20 mM (C) -0.1 +0.7 N.D. N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day1 -0.1 +0.8 N.D. N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day2 +0.0 +0.7 N.D. N.D. N.D.
carbon source D-Glucose 20 mM (C) +0.1 +0.7 N.D. N.D. N.D.
carbon source NAG (C) +0.1 +0.7 N.D. N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day2 +0.0 +0.8 N.D. N.D. N.D.
carbon source Dextran 5 mg/ml (C) +0.3 +0.4 N.D. N.D. N.D.
carbon source NAG (C) +0.0 +0.8 N.D. N.D. N.D.
carbon source D-Mannose 20 mM (C) +0.1 +0.8 N.D. N.D. N.D.
carbon source D-Galactose 20 mM (C) -0.2 +1.1 N.D. N.D. N.D.
carbon source D-Mannose 20 mM (C) +0.1 +0.8 N.D. N.D. N.D.
carbon source Sucrose 20 mM (C) +0.1 +0.9 N.D. N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.5 +0.5 N.D. N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 +0.5 +0.5 N.D. N.D. N.D.
carbon source D-Glucose (C) +0.3 +0.7 N.D. N.D. N.D.
carbon source D-Glucose (C) +0.1 +1.1 N.D. N.D. N.D.
carbon source D-Mannose (C) +0.4 +0.8 N.D. N.D. N.D.
carbon source D-Galactose 20 mM (C) +0.0 +1.2 N.D. N.D. N.D.
carbon source D-Galactose 20 mM (C) +0.4 +1.3 N.D. N.D. N.D.
carbon source D-Galactose (C) +0.1 +1.7 N.D. N.D. N.D.
carbon source D-Galactose (C) +0.3 +1.6 N.D. N.D. N.D.
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