Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS15415 and HMPREF1058_RS15410 are separated by 123 nucleotidesHMPREF1058_RS15410 and HMPREF1058_RS15405 are separated by 41 nucleotidesHMPREF1058_RS15405 and HMPREF1058_RS15400 are separated by 152 nucleotidesHMPREF1058_RS15400 and HMPREF1058_RS15395 overlap by 4 nucleotides HMPREF1058_RS15415: HMPREF1058_RS15415 - copper resistance protein NlpE N-terminal domain-containing protein, at 928,871 to 929,359 _RS15415 HMPREF1058_RS15410: HMPREF1058_RS15410 - DUF4136 domain-containing protein, at 929,483 to 930,121 _RS15410 HMPREF1058_RS15405: HMPREF1058_RS15405 - outer membrane beta-barrel protein, at 930,163 to 930,789 _RS15405 HMPREF1058_RS15400: HMPREF1058_RS15400 - polyprenol monophosphomannose synthase, at 930,942 to 931,691 _RS15400 HMPREF1058_RS15395: HMPREF1058_RS15395 - dihydroorotase, at 931,688 to 933,028 _RS15395
Group Condition HMPREF1058_RS15415 HMPREF1058_RS15410 HMPREF1058_RS15405 HMPREF1058_RS15400 HMPREF1058_RS15395
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 +0.1 -4.0 -3.7 N.D. -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.1 -3.5 -3.8 N.D. -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 -0.1 -3.4 -3.3 N.D. -1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 +0.2 -3.4 -3.1 N.D. -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -0.1 -3.1 -3.3 N.D. -1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day3 -0.2 -1.7 -1.8 N.D. -3.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day1 -0.2 -1.7 -1.5 N.D. -3.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day1 -0.1 -1.7 -1.7 N.D. -3.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day2 -0.0 -1.8 -1.6 N.D. -3.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day2 -0.0 -1.7 -1.6 N.D. -3.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day2 -0.1 -1.5 -1.4 N.D. -3.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.2 -2.9 -2.9 N.D. -1.3
carbon source D-Galactose (C) -1.0 -1.3 -1.6 N.D. -3.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day2 -0.1 -1.6 -1.3 N.D. -3.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day3 -0.1 -1.4 -1.4 N.D. -3.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 -0.0 -1.6 -1.3 N.D. -3.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1 -0.2 -1.4 -1.2 N.D. -3.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day4 -0.2 -1.4 -1.5 N.D. -3.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 -0.0 -1.5 -1.6 N.D. -3.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day4 -0.1 -1.5 -1.4 N.D. -3.6
carbon source D-Galactose (C) -1.2 -1.2 -1.5 N.D. -2.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day2 -0.1 -1.1 -1.2 N.D. -3.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day3 -0.0 -1.1 -1.1 N.D. -3.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 -0.1 -1.2 -1.1 N.D. -3.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day1 -0.0 -1.2 -1.0 N.D. -4.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day3 -0.1 -1.0 -1.3 N.D. -3.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -0.1 -2.3 -2.2 N.D. -1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 +0.2 -2.5 -2.2 N.D. -1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.0 -2.8 -1.9 N.D. -1.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day2 -0.3 -1.1 -0.9 N.D. -3.8
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