Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS15220 and HMPREF1058_RS15215 overlap by 4 nucleotidesHMPREF1058_RS15215 and HMPREF1058_RS15210 are separated by 89 nucleotidesHMPREF1058_RS15210 and HMPREF1058_RS15205 overlap by 17 nucleotidesHMPREF1058_RS15205 and HMPREF1058_RS15200 are separated by 341 nucleotides HMPREF1058_RS15220: HMPREF1058_RS15220 - MFS transporter, at 971,591 to 972,787 _RS15220 HMPREF1058_RS15215: HMPREF1058_RS15215 - hypothetical protein, at 972,784 to 973,926 _RS15215 HMPREF1058_RS15210: HMPREF1058_RS15210 - aminotransferase class IV, at 974,016 to 974,609 _RS15210 HMPREF1058_RS15205: HMPREF1058_RS15205 - aminodeoxychorismate synthase component I, at 974,593 to 975,576 _RS15205 HMPREF1058_RS15200: HMPREF1058_RS15200 - hypothetical protein, at 975,918 to 977,951 _RS15200
Group Condition HMPREF1058_RS15220 HMPREF1058_RS15215 HMPREF1058_RS15210 HMPREF1058_RS15205 HMPREF1058_RS15200
carbon source a-Cyclodextrin (C) -0.2 -0.3 -0.7 -0.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.1 -0.9 +0.0 +0.1 -1.0
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.6 +0.3 -1.0 -0.4 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.1 -0.9 -0.1 +0.2 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -0.3 -1.2 -0.0 +0.4 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.2 -0.4 -0.6 -0.5 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 -0.1 -1.2 -0.2 +0.4 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.3 +0.2 -0.6 -0.4 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.2 +0.6 -0.1 +0.0 -1.6
carbon source D-Mannose (C) -0.4 +0.3 -0.7 +0.2 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.0 -0.6 -0.1 +0.5 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.2 +0.6 -0.3 +0.0 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 -0.2 -1.0 +0.2 +0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.2 +0.5 -0.4 +0.2 -1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -0.1 -1.2 +0.1 +0.3 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.4 -0.7 +0.0 +0.5 -0.7
carbon source D-Maltose 20 mM (C) -0.1 +0.8 -0.6 -0.5 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.3 -1.4 -0.0 +0.3 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.3 -0.7 -0.2 +0.4 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 +0.0 -0.9 +0.4 +0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +0.1 -1.0 +0.2 +0.5 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day5 +0.2 -0.8 +0.2 +0.3 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.4 +0.6 +0.2 -0.0 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.1 -1.0 +0.1 +0.7 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.3 -0.9 +0.5 +0.4 +0.3
carbon source D-Maltose 20 mM (C) -0.3 +0.8 -0.4 +0.2 +0.4
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.2 -0.8 +0.6 +0.7 +0.1
carbon source Galactose 1-phosphate dipotassium salt (C) +0.3 +0.8 -0.3 +0.1 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.3 -0.4 +0.1 +0.6 +0.4
carbon source D-Galacturonic Acid 20 mM (C) +0.2 +1.1 -0.2 -0.5 +0.4
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HMPREF1058_RS15220
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HMPREF1058_RS15215
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HMPREF1058_RS15200
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