Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS14785 and HMPREF1058_RS14780 are separated by 202 nucleotidesHMPREF1058_RS14780 and HMPREF1058_RS14775 are separated by 5 nucleotidesHMPREF1058_RS14775 and HMPREF1058_RS14770 are separated by 503 nucleotidesHMPREF1058_RS14770 and HMPREF1058_RS21590 are separated by 62 nucleotides HMPREF1058_RS14785: HMPREF1058_RS14785 - bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II, at 1,103,229 to 1,104,296 _RS14785 HMPREF1058_RS14780: HMPREF1058_RS14780 - exo-alpha-sialidase, at 1,104,499 to 1,106,208 _RS14780 HMPREF1058_RS14775: HMPREF1058_RS14775 - FadR family transcriptional regulator, at 1,106,214 to 1,106,960 _RS14775 HMPREF1058_RS14770: HMPREF1058_RS14770 - prephenate dehydrogenase, at 1,107,464 to 1,108,237 _RS14770 HMPREF1058_RS21590: HMPREF1058_RS21590 - hypothetical protein, at 1,108,300 to 1,108,473 _RS21590
Group Condition HMPREF1058_RS14785 HMPREF1058_RS14780 HMPREF1058_RS14775 HMPREF1058_RS14770 HMPREF1058_RS21590
carbon source D-Xylose 20 mM (C) -6.6 -0.1 +0.0 -7.0 -0.0
carbon source Beta-Lactose 20 mM (C) -6.5 -0.1 +0.2 -7.2 -0.0
carbon source Beta-Lactose 20 mM (C) -6.5 +0.1 +0.1 -7.2 -0.0
carbon source D-Xylose 20 mM (C) -6.5 +0.1 -0.1 -6.8 -0.1
carbon source L-Arabinose 20 mM (C) -6.2 +0.0 +0.1 -7.2 +0.1
carbon source L-Rhamnose 20 mM (C) -6.6 -0.1 -0.0 -6.6 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day3 -6.4 +0.1 -0.2 -6.6 -0.0
carbon source beta-Cyclodextrin 5 mg/ml (C) -6.0 -0.3 -0.2 -6.7 +0.0
carbon source D-Glucose-6-Phosphate 20 mM (C) -6.1 -0.0 -0.0 -6.9 +0.1
carbon source Fructose-6-phosphate (C) -6.2 -0.2 +0.0 -6.6 +0.1
carbon source Beta-Lactose 20 mM (C) -6.1 +0.1 +0.1 -6.8 -0.2
carbon source D-Xylose 20 mM (C) -6.2 +0.1 -0.0 -6.7 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day2 -6.4 +0.1 -0.1 -5.8 -0.4
carbon source D-Glucosamine 6-phosphate (C) -6.3 +0.1 -0.1 -6.7 +0.5
carbon source Dextrin from potato starch 5 mg/ml (C) -5.9 +0.1 +0.1 -7.2 +0.4
carbon source D-Galactose 20 mM (C) -5.6 -0.3 -0.0 -6.6 +0.3
carbon source D-Fructose 20 mM (C) -6.0 -0.2 +0.0 -6.5 +0.3
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -6.0 +0.4 +0.1 -6.4 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day4 -6.1 +0.2 -0.2 -6.3 +0.3
carbon source D-Mannose 20 mM (C) -5.5 -0.2 -0.1 -6.9 +0.5
carbon source Fructooligosaccharides (FOS) 5 mg/ml (C) -6.1 +0.1 -0.1 -6.4 +0.3
carbon source D-Maltose 20 mM (C) -5.9 +0.1 +0.0 -6.7 +0.4
carbon source L-Fucose 20 mM (C) -6.4 -0.1 -0.1 -6.1 +0.7
carbon source D-Glucose 20 mM (C) -6.3 +0.1 -0.0 -6.2 +0.4
carbon source D-Maltose 20 mM (C) -6.2 +0.2 +0.3 -6.7 +0.6
carbon source D-Glucosamine Hydrochloride 2.5 mg/ml (C) -6.3 -0.2 -0.1 -6.2 +1.1
carbon source D-Arabinose 20 mM (C) -6.1 +0.0 +0.2 -6.1 +0.4
carbon source D-Glucosamine 6-phosphate (C) -6.2 -0.0 +0.0 -5.8 +0.9
carbon source D-Glucose 20 mM (C) -5.8 +0.3 +0.1 -6.5 +1.0
carbon source Fructose-6-phosphate (C) -6.0 +0.1 +0.2 -5.8 +0.8
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