Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS14370 and HMPREF1058_RS14365 overlap by 4 nucleotidesHMPREF1058_RS14365 and HMPREF1058_RS14360 are separated by 59 nucleotidesHMPREF1058_RS14360 and HMPREF1058_RS14355 are separated by 568 nucleotidesHMPREF1058_RS14355 and HMPREF1058_RS0119430 are separated by 194 nucleotides HMPREF1058_RS14370: HMPREF1058_RS14370 - SDR family NAD(P)-dependent oxidoreductase, at 1,217,940 to 1,218,800 _RS14370 HMPREF1058_RS14365: HMPREF1058_RS14365 - NADH:flavin oxidoreductase, at 1,218,797 to 1,220,023 _RS14365 HMPREF1058_RS14360: HMPREF1058_RS14360 - DUF1295 domain-containing protein, at 1,220,083 to 1,220,847 _RS14360 HMPREF1058_RS14355: HMPREF1058_RS14355 - GNAT family N-acetyltransferase, at 1,221,416 to 1,221,877 _RS14355 HMPREF1058_RS0119430: HMPREF1058_RS0119430 - hypothetical protein, at 1,222,072 to 1,222,299 _RS0119430
Group Condition HMPREF1058_RS14370 HMPREF1058_RS14365 HMPREF1058_RS14360 HMPREF1058_RS14355 HMPREF1058_RS0119430
carbon source Sucrose 20 mM (C) -0.7 -0.1 -0.7 -0.8 N.D.
carbon source D-Maltose 20 mM (C) -0.4 -0.3 -0.6 -0.9 N.D.
carbon source D-Galactose 20 mM (C) -0.7 -0.3 -0.7 +0.1 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.1 +0.5 -0.3 -0.6 N.D.
carbon source D-Maltose 20 mM (C) -0.5 -0.2 +0.4 -1.1 N.D.
carbon source D-Glucose 5 mg/ml (C) +0.4 -0.1 -0.6 -0.7 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.9 +0.1 -0.3 +0.4 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -1.0 +0.2 +0.4 -0.3 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.6 +0.0 -0.6 -0.7 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.1 +0.5 +0.0 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -1.0 +0.5 -0.1 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 -0.9 +0.7 +0.6 -0.4 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.1 +0.2 +0.8 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 -0.8 +0.6 +0.4 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4 -0.7 +0.5 +0.3 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -0.9 +0.8 +0.7 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -1.0 +0.8 +0.4 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.8 +0.9 +0.7 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5 -0.6 +0.8 +0.3 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -0.6 +0.7 +0.2 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.6 +0.7 +0.3 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.7 +0.9 +0.8 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.8 +0.9 +1.1 -0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -0.6 +0.7 +0.8 -0.1 N.D.
carbon source D-Glucose (C) -0.0 +0.3 +0.9 -0.3 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.3 -0.3 +1.2 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.8 +1.3 +1.0 -0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.4 +0.1 -0.2 +1.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.3 +1.1 +1.4 -0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.3 +0.5 +0.5 +0.6 N.D.
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