Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS13950 and HMPREF1058_RS13945 are separated by 114 nucleotidesHMPREF1058_RS13945 and HMPREF1058_RS13940 are separated by 179 nucleotidesHMPREF1058_RS13940 and HMPREF1058_RS13935 are separated by 35 nucleotidesHMPREF1058_RS13935 and HMPREF1058_RS13930 are separated by 41 nucleotides HMPREF1058_RS13950: HMPREF1058_RS13950 - immunity 17 family protein, at 1,319,994 to 1,320,215 _RS13950 HMPREF1058_RS13945: HMPREF1058_RS13945 - plasmid pRiA4b ORF-3 family protein, at 1,320,330 to 1,321,889 _RS13945 HMPREF1058_RS13940: HMPREF1058_RS13940 - hypothetical protein, at 1,322,069 to 1,322,404 _RS13940 HMPREF1058_RS13935: HMPREF1058_RS13935 - thioredoxin, at 1,322,440 to 1,322,754 _RS13935 HMPREF1058_RS13930: HMPREF1058_RS13930 - DNA polymerase III subunit alpha, at 1,322,796 to 1,326,593 _RS13930
Group Condition HMPREF1058_RS13950 HMPREF1058_RS13945 HMPREF1058_RS13940 HMPREF1058_RS13935 HMPREF1058_RS13930
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.0 -0.2 -1.1 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.2 -0.2 -1.1 N.D. N.D.
carbon source D-Mannose 20 mM (C) -0.1 -0.3 -0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.0 -0.2 -0.9 N.D. N.D.
carbon source D-Glucose-6-Phosphate 20 mM (C) -1.0 +0.1 +0.1 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.8 +0.1 +0.4 N.D. N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.6 -0.1 +0.4 N.D. N.D.
carbon source D-Maltose 20 mM (C) +0.5 -0.1 -0.5 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.5 -0.2 +0.6 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) -0.5 +0.0 +0.5 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.7 +0.2 +0.6 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.6 +0.0 -0.6 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.6 +0.1 +0.5 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.6 -0.1 +0.8 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.8 +0.1 +0.7 N.D. N.D.
carbon source D-Glucose 5 mg/ml (C) -0.7 -0.0 +0.8 N.D. N.D.
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.5 +0.1 +0.5 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.4 -0.1 +0.7 N.D. N.D.
carbon source Sucrose 20 mM (C) +0.6 +0.0 -0.4 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.7 -0.3 -0.1 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.9 -0.0 +1.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.5 +0.2 -0.3 N.D. N.D.
carbon source Sucrose 20 mM (C) +0.7 -0.3 +0.2 N.D. N.D.
carbon source D-Glucose 5 mg/ml (C) -0.2 -0.0 +0.9 N.D. N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.6 -0.1 +0.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +1.1 -0.2 -0.0 N.D. N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 +0.0 +0.9 N.D. N.D.
carbon source D-Glucose (C) +1.2 -0.2 +0.4 N.D. N.D.
carbon source D-Galactose (C) +0.5 -0.0 +1.3 N.D. N.D.
carbon source D-Galactose (C) +0.5 +0.2 +1.4 N.D. N.D.
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HMPREF1058_RS13930
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