Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS13925 and HMPREF1058_RS13920 are separated by 11 nucleotidesHMPREF1058_RS13920 and HMPREF1058_RS13915 are separated by 52 nucleotidesHMPREF1058_RS13915 and HMPREF1058_RS13910 are separated by 3 nucleotidesHMPREF1058_RS13910 and HMPREF1058_RS13905 are separated by 1 nucleotides HMPREF1058_RS13925: HMPREF1058_RS13925 - phosphatidylserine decarboxylase family protein, at 1,326,785 to 1,327,471 _RS13925 HMPREF1058_RS13920: HMPREF1058_RS13920 - CDP-alcohol phosphatidyltransferase family protein, at 1,327,483 to 1,328,190 _RS13920 HMPREF1058_RS13915: HMPREF1058_RS13915 - DUF4834 family protein, at 1,328,243 to 1,328,545 _RS13915 HMPREF1058_RS13910: HMPREF1058_RS13910 - nucleoside deaminase, at 1,328,549 to 1,328,983 _RS13910 HMPREF1058_RS13905: HMPREF1058_RS13905 - hypothetical protein, at 1,328,985 to 1,329,218 _RS13905
Group Condition HMPREF1058_RS13925 HMPREF1058_RS13920 HMPREF1058_RS13915 HMPREF1058_RS13910 HMPREF1058_RS13905
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day1 N.D. N.D. -0.3 -4.1 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 N.D. N.D. -0.2 -4.6 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 N.D. N.D. -0.4 -4.5 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 N.D. N.D. -0.2 -4.4 -1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 N.D. N.D. -0.7 -4.2 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 N.D. N.D. -0.0 -4.2 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 N.D. N.D. -0.1 -4.6 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 N.D. N.D. -0.1 -4.1 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 N.D. N.D. -0.2 -4.3 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 N.D. N.D. -0.1 -4.4 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 N.D. N.D. -0.1 -4.8 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 N.D. N.D. +0.0 -4.6 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. N.D. -0.3 -4.4 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 N.D. N.D. -0.0 -4.3 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day2 N.D. N.D. -0.4 -3.5 -1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 N.D. N.D. -0.3 -4.2 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 N.D. N.D. -0.0 -4.6 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 N.D. N.D. -0.0 -4.2 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 N.D. N.D. -0.6 -3.4 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 N.D. N.D. +0.0 -4.2 -0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 N.D. N.D. -0.3 -3.8 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day2 N.D. N.D. -0.3 -3.4 -1.3
carbon source D-Galactose 20 mM (C) N.D. N.D. -0.6 -3.4 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 N.D. N.D. -0.1 -4.4 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3 N.D. N.D. +0.3 -4.5 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 N.D. N.D. -0.1 -4.4 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 N.D. N.D. +0.0 -4.6 -0.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. N.D. +0.2 -3.7 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 N.D. N.D. +0.4 -3.9 -1.1
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. N.D. +0.5 -3.4 -1.0
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