Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS21595 and HMPREF1058_RS13685 are separated by 47 nucleotidesHMPREF1058_RS13685 and HMPREF1058_RS13680 are separated by 38 nucleotidesHMPREF1058_RS13680 and HMPREF1058_RS20225 are separated by 1450 nucleotidesHMPREF1058_RS20225 and HMPREF1058_RS13675 are separated by 122 nucleotides HMPREF1058_RS21595: HMPREF1058_RS21595 - hypothetical protein, at 1,399,696 to 1,399,884 _RS21595 HMPREF1058_RS13685: HMPREF1058_RS13685 - sigma-70 family RNA polymerase sigma factor, at 1,399,932 to 1,400,492 _RS13685 HMPREF1058_RS13680: HMPREF1058_RS13680 - hypothetical protein, at 1,400,531 to 1,400,923 _RS13680 HMPREF1058_RS20225: HMPREF1058_RS20225 - hypothetical protein, at 1,402,374 to 1,402,811 _RS20225 HMPREF1058_RS13675: HMPREF1058_RS13675 - hypothetical protein, at 1,402,934 to 1,403,296 _RS13675
Group Condition HMPREF1058_RS21595 HMPREF1058_RS13685 HMPREF1058_RS13680 HMPREF1058_RS20225 HMPREF1058_RS13675
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. -0.3 -0.4 -0.7 -0.5
carbon source D-Glucose (C) N.D. -0.3 -0.7 -0.8 -0.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.5 -1.0 -0.8 +1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. -0.7 +0.2 -0.1 -0.4
carbon source D-Mannose 20 mM (C) N.D. -0.1 -0.6 +0.3 -0.4
carbon source NAG (C) N.D. -0.8 -0.6 -0.0 +0.5
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) N.D. -0.3 -0.1 +0.4 -0.9
carbon source NAG (C) N.D. -0.4 -0.4 -0.3 +0.4
carbon source Galactose 1-phosphate dipotassium salt (C) N.D. -0.2 +0.4 -0.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 N.D. -0.3 +0.7 -0.8 -0.1
carbon source D-Galactose 20 mM (C) N.D. -1.0 +0.3 +0.1 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 N.D. -0.6 +1.0 -0.2 -0.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.2 +1.2 -0.7 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. -0.6 +0.6 +0.1 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.6 +0.5 +0.6 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 N.D. +0.1 +0.4 +0.4 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 N.D. +0.1 +0.4 +0.5 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3 N.D. +0.4 +0.1 +0.6 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 N.D. +0.6 -0.5 +0.6 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 N.D. -0.2 +1.4 -0.5 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 N.D. -0.1 +1.1 -0.4 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 N.D. +0.6 +0.4 -0.3 +0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +0.1 +0.6 -0.1 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 N.D. +0.8 +0.1 +0.6 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 N.D. +0.7 +0.3 +0.5 -0.0
carbon source Polygalacturonic 5 mg/ml (C) N.D. +0.1 +0.4 -0.0 +1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 N.D. +0.9 +0.0 +0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 N.D. +0.6 +0.0 +0.6 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. +0.5 +0.1 +0.5 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 N.D. +0.6 +0.5 +0.7 +0.1
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HMPREF1058_RS21595
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HMPREF1058_RS13685
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HMPREF1058_RS20225
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HMPREF1058_RS13675
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