Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS13260 and HMPREF1058_RS13255 are separated by 68 nucleotidesHMPREF1058_RS13255 and HMPREF1058_RS13250 are separated by 150 nucleotidesHMPREF1058_RS13250 and HMPREF1058_RS13245 are separated by 264 nucleotidesHMPREF1058_RS13245 and HMPREF1058_RS13240 are separated by 202 nucleotides HMPREF1058_RS13260: HMPREF1058_RS13260 - integrase catalytic domain-containing protein, at 1,544,242 to 1,545,597 _RS13260 HMPREF1058_RS13255: HMPREF1058_RS13255 - hypothetical protein, at 1,545,666 to 1,547,246 _RS13255 HMPREF1058_RS13250: HMPREF1058_RS13250 - DUF3853 family protein, at 1,547,397 to 1,547,756 _RS13250 HMPREF1058_RS13245: HMPREF1058_RS13245 - hypothetical protein, at 1,548,021 to 1,548,506 _RS13245 HMPREF1058_RS13240: HMPREF1058_RS13240 - hypothetical protein, at 1,548,709 to 1,549,395 _RS13240
Group Condition HMPREF1058_RS13260 HMPREF1058_RS13255 HMPREF1058_RS13250 HMPREF1058_RS13245 HMPREF1058_RS13240
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.0 -0.2 -3.1 -0.5 -0.5
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 +0.1 -4.3 +0.1 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.0 -0.0 -2.4 -0.7 -0.9
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.0 +0.0 -4.2 +0.5 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.2 -0.1 -3.0 -0.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.1 -0.3 -1.6 -1.0 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.0 -0.1 -1.7 -0.8 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.2 -0.1 -2.2 -0.8 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.1 +0.1 -2.2 -0.9 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.1 -0.1 -1.9 -0.7 -0.2
carbon source D-Maltose 20 mM (C) +0.0 -0.1 -1.3 -0.8 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 +0.2 -0.1 -1.7 -0.5 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.0 -0.1 -1.1 -1.3 -0.0
carbon source D-Maltose 20 mM (C) -0.2 +0.0 -0.6 -1.5 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.0 -0.2 -1.0 -0.8 -0.5
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.4 -0.1 -1.1 -0.7 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 +0.0 -0.1 -1.3 -0.7 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.3 +0.0 -1.6 -0.5 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.2 +0.1 -1.4 -1.0 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.4 -0.0 -1.5 -0.2 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.5 -0.1 -1.1 -0.7 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.4 +0.0 -1.9 +0.2 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.1 -0.2 -1.4 +1.5 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.3 -0.1 +0.8 -0.8 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -0.2 -0.1 -0.1 +1.5 -0.5
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) +0.6 +0.3 -0.7 +0.4 +0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 +0.2 +1.1 +0.6 +0.1
carbon source Galactose 1-phosphate dipotassium salt (C) +0.2 -0.2 +1.1 +0.8 -0.0
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.0 -0.1 +1.2 +0.5 +0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 +0.2 +0.7 +1.2 +0.2
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