Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS20230 and HMPREF1058_RS0119510 are separated by 138 nucleotidesHMPREF1058_RS0119510 and HMPREF1058_RS13205 are separated by 56 nucleotidesHMPREF1058_RS13205 and HMPREF1058_RS0119515 are separated by 218 nucleotidesHMPREF1058_RS0119515 and HMPREF1058_RS20565 are separated by 656 nucleotides HMPREF1058_RS20230: HMPREF1058_RS20230 - DNA-deoxyinosine glycosylase, at 1,556,105 to 1,556,950 _RS20230 HMPREF1058_RS0119510: HMPREF1058_RS0119510 - hypothetical protein, at 1,557,089 to 1,557,337 _RS0119510 HMPREF1058_RS13205: HMPREF1058_RS13205 - DNA primase, at 1,557,394 to 1,557,705 _RS13205 HMPREF1058_RS0119515: HMPREF1058_RS0119515 - hypothetical protein, at 1,557,924 to 1,558,217 _RS0119515 HMPREF1058_RS20565: HMPREF1058_RS20565 - IS66 family insertion sequence element accessory protein TnpB, at 1,558,874 to 1,559,017 _RS20565
Group Condition HMPREF1058_RS20230 HMPREF1058_RS0119510 HMPREF1058_RS13205 HMPREF1058_RS0119515 HMPREF1058_RS20565
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.1 -2.5 -0.7 +0.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.1 -0.9 -1.7 -0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.1 -1.4 -1.1 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.1 -1.0 -1.1 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.2 -0.9 -1.1 -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.0 -0.8 -1.6 +0.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.1 -1.2 -1.0 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.2 -0.8 -0.6 -0.5 N.D.
carbon source Pectin from citrus peel (C) -0.2 -0.8 -0.8 -0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 +0.0 -1.1 -0.8 -0.2 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 -0.5 -0.9 -0.2 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.4 -0.2 -0.8 -0.4 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.4 -1.0 -0.0 -0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.0 -1.4 -0.7 +0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.2 -1.0 -0.8 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.0 -1.2 -0.6 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +0.0 -0.5 -1.0 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.2 -0.7 -0.8 -0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.0 -1.1 -0.7 +0.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -0.1 -1.3 +0.2 -0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.4 -0.3 +0.2 -0.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.1 -1.2 -0.2 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3 +0.2 -0.9 -0.7 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 +0.1 -1.1 -0.4 +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.1 -1.8 +1.1 -0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -0.2 -0.7 +0.4 -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -0.1 -0.6 +0.7 -0.4 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 -0.8 +0.9 -0.5 N.D.
carbon source Galactose 1-phosphate dipotassium salt (C) -0.3 +0.8 +0.4 -0.2 N.D.
carbon source D-Galactose 20 mM (C) -0.4 +0.4 +1.0 +0.4 N.D.
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HMPREF1058_RS20230
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HMPREF1058_RS20565
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