Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS13055 and HMPREF1058_RS13050 are separated by 5 nucleotidesHMPREF1058_RS13050 and HMPREF1058_RS13045 overlap by 4 nucleotidesHMPREF1058_RS13045 and HMPREF1058_RS13040 are separated by 436 nucleotidesHMPREF1058_RS13040 and HMPREF1058_RS13035 are separated by 1039 nucleotides HMPREF1058_RS13055: HMPREF1058_RS13055 - hypothetical protein, at 1,604,573 to 1,605,289 _RS13055 HMPREF1058_RS13050: HMPREF1058_RS13050 - hypothetical protein, at 1,605,295 to 1,605,729 _RS13050 HMPREF1058_RS13045: HMPREF1058_RS13045 - hypothetical protein, at 1,605,726 to 1,606,064 _RS13045 HMPREF1058_RS13040: HMPREF1058_RS13040 - winged helix-turn-helix domain-containing protein, at 1,606,501 to 1,606,785 _RS13040 HMPREF1058_RS13035: HMPREF1058_RS13035 - RagB/SusD family nutrient uptake outer membrane protein, at 1,607,825 to 1,609,837 _RS13035
Group Condition HMPREF1058_RS13055 HMPREF1058_RS13050 HMPREF1058_RS13045 HMPREF1058_RS13040 HMPREF1058_RS13035
carbon source Pectin from citrus peel (C) +0.2 -0.0 +0.4 -1.7 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day5 -0.3 -0.7 +0.6 -0.4 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -0.3 -0.8 +0.6 -0.3 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.2 -0.6 +0.8 +0.2 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 -0.2 -1.0 +1.1 -0.3 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day5 -0.3 -0.6 +0.7 -0.2 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.3 -1.4 +1.4 -0.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.4 -0.7 +1.1 -0.1 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.2 -0.9 +0.9 +0.3 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 -0.2 -0.7 +1.0 -0.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 -0.3 -0.6 +0.8 +0.3 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.2 -1.1 +1.2 +0.1 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.3 +0.5 -1.1 +0.9 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -0.4 -0.5 +0.9 +0.2 +0.3
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.1 +0.8 -0.8 +0.7 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.5 -0.6 +1.0 +0.5 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.3 -0.5 +1.4 -0.1 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +0.1 -0.3 +1.6 -0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.3 -0.6 +1.7 +0.0 +0.5
carbon source Dextran 5 mg/ml (C) +0.3 -0.5 +0.9 +0.6 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -0.2 -0.9 +1.9 +0.2 +0.5
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) +0.1 +0.7 -0.2 +1.1 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.1 -0.4 +1.0 +0.6 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.3 -0.5 +1.0 +0.7 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.3 -0.4 +1.6 +0.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 +0.2 -0.2 +1.5 +0.2 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.1 +0.7 +0.9 +0.6 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3 +0.3 +0.2 +1.0 +0.5 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.1 +0.4 +1.2 +0.7 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.2 +0.7 +0.7 +0.7 +0.3
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HMPREF1058_RS13055
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HMPREF1058_RS13035
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