Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS12810 and HMPREF1058_RS12805 are separated by 80 nucleotidesHMPREF1058_RS12805 and HMPREF1058_RS12800 are separated by 168 nucleotidesHMPREF1058_RS12800 and HMPREF1058_RS12795 are separated by 89 nucleotidesHMPREF1058_RS12795 and HMPREF1058_RS12790 are separated by 294 nucleotides HMPREF1058_RS12810: HMPREF1058_RS12810 - VanZ family protein, at 26,640 to 27,026 _RS12810 HMPREF1058_RS12805: HMPREF1058_RS12805 - RNA polymerase sigma factor, at 27,107 to 27,610 _RS12805 HMPREF1058_RS12800: HMPREF1058_RS12800 - TonB-dependent receptor, at 27,779 to 30,253 _RS12800 HMPREF1058_RS12795: HMPREF1058_RS12795 - CYTH domain-containing protein, at 30,343 to 30,813 _RS12795 HMPREF1058_RS12790: HMPREF1058_RS12790 - peptide chain release factor 2, at 31,108 to 32,223 _RS12790
Group Condition HMPREF1058_RS12810 HMPREF1058_RS12805 HMPREF1058_RS12800 HMPREF1058_RS12795 HMPREF1058_RS12790
carbon source D-Galactose 20 mM (C) -5.9 -4.6 -1.7 -3.0 N.D.
carbon source D-Galactose 20 mM (C) -3.8 -5.6 -1.3 -3.6 N.D.
carbon source Sucrose 20 mM (C) -5.0 -2.7 -1.8 -4.6 N.D.
carbon source D-Galactose 20 mM (C) -4.6 -4.3 -1.4 -1.8 N.D.
carbon source Sucrose 20 mM (C) -2.7 -3.2 -1.1 -4.6 N.D.
carbon source D-Mannose 20 mM (C) -2.5 -3.1 -0.8 -4.2 N.D.
carbon source D-Galactose (C) -4.5 -2.7 -0.9 -2.2 N.D.
carbon source D-Galactose (C) -4.4 -2.7 -1.0 -1.8 N.D.
carbon source D-Mannose 20 mM (C) -2.3 -2.4 -0.9 -3.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day1 -1.6 -3.0 -1.9 -1.5 N.D.
carbon source D-Glucose 20 mM (C) -1.4 -2.7 -0.5 -3.3 N.D.
carbon source D-Glucose 20 mM (C) -1.6 -2.3 -0.5 -3.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day2 -1.3 -3.0 -1.6 -1.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day2 -1.3 -2.7 -1.7 -1.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 -1.2 -2.6 -1.4 -1.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 -1.3 -2.4 -1.5 -1.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 -1.1 -2.6 -1.5 -1.5 N.D.
carbon source D-Mannose (C) -2.1 -1.0 -0.4 -3.1 N.D.
carbon source D-Mannose (C) -1.7 -1.4 -0.3 -3.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -1.0 -2.1 -1.0 -2.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 -1.2 -2.2 -1.1 -1.8 N.D.
carbon source D-Glucose 20 mM (C) -0.3 -1.1 +0.2 -5.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -0.9 -2.0 -1.0 -1.5 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.5 -1.4 +0.2 -4.2 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.4 -1.2 +0.2 -3.7 N.D.
carbon source D-Glucose (C) +1.0 +1.1 +0.5 -3.2 N.D.
carbon source D-Glucose 5 mg/ml (C) +1.2 +1.7 +0.6 -2.1 N.D.
carbon source D-Glucose 5 mg/ml (C) +1.4 +1.8 +0.7 -2.1 N.D.
carbon source NAG 2.5 mg/ml (C) +2.0 +4.9 +0.5 +0.2 N.D.
carbon source NAG 2.5 mg/ml (C) +2.1 +5.4 +0.4 +0.6 N.D.
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