Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS12600 and HMPREF1058_RS12595 are separated by 220 nucleotidesHMPREF1058_RS12595 and HMPREF1058_RS12590 are separated by 58 nucleotidesHMPREF1058_RS12590 and HMPREF1058_RS12585 are separated by 385 nucleotidesHMPREF1058_RS12585 and HMPREF1058_RS12580 are separated by 126 nucleotides HMPREF1058_RS12600: HMPREF1058_RS12600 - hypothetical protein, at 72,637 to 72,927 _RS12600 HMPREF1058_RS12595: HMPREF1058_RS12595 - hypothetical protein, at 73,148 to 73,489 _RS12595 HMPREF1058_RS12590: HMPREF1058_RS12590 - transposase, at 73,548 to 74,468 _RS12590 HMPREF1058_RS12585: HMPREF1058_RS12585 - IS1182 family transposase, at 74,854 to 75,257 _RS12585 HMPREF1058_RS12580: HMPREF1058_RS12580 - tRNA-Leu, at 75,384 to 75,467 _RS12580
Group Condition HMPREF1058_RS12600 HMPREF1058_RS12595 HMPREF1058_RS12590 HMPREF1058_RS12585 HMPREF1058_RS12580
carbon source D-Galactose 20 mM (C) +0.0 -5.5 +0.3 N.D. N.D.
carbon source Amylose from potato 5 mg/ml (C) +0.5 -5.2 -0.6 N.D. N.D.
carbon source D-Galactose 20 mM (C) -0.4 -2.1 -1.0 N.D. N.D.
carbon source Polygalacturonic 5 mg/ml (C) -0.1 -3.0 +0.1 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.7 -3.4 -0.1 N.D. N.D.
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) -0.7 -2.6 +0.5 N.D. N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.6 -2.5 +0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.1 -2.6 +0.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.6 -2.3 -0.3 N.D. N.D.
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.1 -2.2 +0.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 +0.7 -1.7 -0.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +1.2 +1.1 -0.6 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.7 +1.9 -0.6 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +1.1 +1.4 -0.2 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.9 +1.7 -0.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +1.1 +1.8 -0.4 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +1.1 +1.9 -0.4 N.D. N.D.
carbon source Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) +0.3 +2.5 -0.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.9 +2.0 -0.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +1.7 +1.2 -0.2 N.D. N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 +2.7 -0.1 N.D. N.D.
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +0.4 +2.2 +0.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 +0.5 +2.6 +0.2 N.D. N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.3 +3.0 -0.0 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +1.2 +2.2 +0.1 N.D. N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.5 +3.6 -0.5 N.D. N.D.
carbon source Pectin from citrus peel (C) +0.7 +3.7 -0.4 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.9 +2.7 +0.5 N.D. N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.4 +3.5 +0.2 N.D. N.D.
carbon source Pectin from citrus peel (C) +0.8 +3.9 -0.2 N.D. N.D.
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