Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS12570 and HMPREF1058_RS12565 are separated by 51 nucleotidesHMPREF1058_RS12565 and HMPREF1058_RS12560 are separated by 200 nucleotidesHMPREF1058_RS12560 and HMPREF1058_RS12555 are separated by 215 nucleotidesHMPREF1058_RS12555 and HMPREF1058_RS12550 are separated by 184 nucleotides HMPREF1058_RS12570: HMPREF1058_RS12570 - HIT family protein, at 76,784 to 77,191 _RS12570 HMPREF1058_RS12565: HMPREF1058_RS12565 - transcription elongation factor GreA, at 77,243 to 77,707 _RS12565 HMPREF1058_RS12560: HMPREF1058_RS12560 - redoxin domain-containing protein, at 77,908 to 79,056 _RS12560 HMPREF1058_RS12555: HMPREF1058_RS12555 - polyribonucleotide nucleotidyltransferase, at 79,272 to 81,407 _RS12555 HMPREF1058_RS12550: HMPREF1058_RS12550 - rubredoxin, at 81,592 to 81,756 _RS12550
Group Condition HMPREF1058_RS12570 HMPREF1058_RS12565 HMPREF1058_RS12560 HMPREF1058_RS12555 HMPREF1058_RS12550
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.0 N.D. -1.4 N.D. -2.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.1 N.D. -0.8 N.D. -1.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.0 N.D. -0.7 N.D. -2.1
carbon source D-Galactose 20 mM (C) -1.0 N.D. +0.1 N.D. -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 +0.1 N.D. -0.6 N.D. -1.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.2 N.D. -0.7 N.D. -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.4 N.D. -0.5 N.D. -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 +0.2 N.D. -0.4 N.D. -1.6
carbon source D-Galactose (C) -0.8 N.D. +0.4 N.D. -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 +0.3 N.D. +0.0 N.D. -1.5
carbon source D-Galactose (C) -0.7 N.D. +0.7 N.D. -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.3 N.D. -1.1 N.D. +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.2 N.D. -0.7 N.D. +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 +0.4 N.D. -0.5 N.D. +1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.4 N.D. -0.6 N.D. +1.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.3 N.D. -0.4 N.D. +1.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.1 N.D. -0.4 N.D. +1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.3 N.D. -0.1 N.D. +1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.5 N.D. -0.3 N.D. +1.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.2 N.D. -0.4 N.D. +2.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.6 N.D. +0.1 N.D. +1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.4 N.D. -0.3 N.D. +2.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.5 N.D. -0.1 N.D. +1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.6 N.D. -0.1 N.D. +2.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.8 N.D. -0.3 N.D. +1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.7 N.D. -0.2 N.D. +2.0
carbon source Pectin from citrus peel (C) +0.6 N.D. +0.5 N.D. +1.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.7 N.D. -0.3 N.D. +2.2
carbon source Pectin from citrus peel (C) +0.6 N.D. +0.5 N.D. +1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.6 N.D. -0.1 N.D. +2.4
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