Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS11960 and HMPREF1058_RS11955 are separated by 155 nucleotidesHMPREF1058_RS11955 and HMPREF1058_RS11950 are separated by 27 nucleotidesHMPREF1058_RS11950 and HMPREF1058_RS11945 overlap by 1 nucleotidesHMPREF1058_RS11945 and HMPREF1058_RS11940 are separated by 378 nucleotides HMPREF1058_RS11960: HMPREF1058_RS11960 - tRNA-Ile, at 236,639 to 236,712 _RS11960 HMPREF1058_RS11955: HMPREF1058_RS11955 - calcium-translocating P-type ATPase, PMCA-type, at 236,868 to 239,498 _RS11955 HMPREF1058_RS11950: HMPREF1058_RS11950 - HAD family phosphatase, at 239,526 to 240,140 _RS11950 HMPREF1058_RS11945: HMPREF1058_RS11945 - bifunctional riboflavin kinase/FAD synthetase, at 240,140 to 241,060 _RS11945 HMPREF1058_RS11940: HMPREF1058_RS11940 - DUF3836 domain-containing protein, at 241,439 to 241,861 _RS11940
Group Condition HMPREF1058_RS11960 HMPREF1058_RS11955 HMPREF1058_RS11950 HMPREF1058_RS11945 HMPREF1058_RS11940
carbon source Vitagos 5650 10 mg/mL (C) N.D. N.D. -0.9 N.D. -1.7
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. -0.0 N.D. -2.6
carbon source Arabinan from sugar beet 5mg/ml (C) N.D. N.D. -0.4 N.D. -2.0
carbon source L-Fucose 20 mM (C) N.D. N.D. -0.0 N.D. -2.2
carbon source Dextrin from potato starch 5 mg/ml (C) N.D. N.D. -0.4 N.D. -1.7
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) N.D. N.D. -0.3 N.D. -1.7
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) N.D. N.D. -0.1 N.D. -1.9
carbon source Bioecolians 10 mg/mL (C) N.D. N.D. -0.4 N.D. -1.5
carbon source beta-Cyclodextrin 5 mg/ml (C) N.D. N.D. -0.3 N.D. -1.6
carbon source D-Glucose 20 mM (C) N.D. N.D. +0.2 N.D. -2.0
carbon source D-Galacturonic Acid 10 mM (C) N.D. N.D. -0.7 N.D. -1.2
phosphorus source N-Acetyl-D-glucosamine 6-phosphate 1 mM phosphorus source N.D. N.D. -1.0 N.D. -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. N.D. +0.8 N.D. -2.6
carbon source D-Maltose 10 mM (C) N.D. N.D. -0.7 N.D. -1.1
carbon source L-Rhamnose 20 mM (C) N.D. N.D. +0.1 N.D. -1.9
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) N.D. N.D. +0.1 N.D. -1.8
carbon source L-Arabinose 20 mM (C) N.D. N.D. -0.4 N.D. -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 N.D. N.D. +0.2 N.D. -1.9
carbon source Polygalacturonic 5 mg/ml (C) N.D. N.D. +0.2 N.D. -1.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. N.D. +0.6 N.D. -2.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 N.D. N.D. +0.4 N.D. -1.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. N.D. +0.6 N.D. -2.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 N.D. N.D. +0.3 N.D. -1.8
carbon source beta-Cyclodextrin 5 mg/ml (C) N.D. N.D. +0.2 N.D. -1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 N.D. N.D. +0.7 N.D. -1.9
carbon source D-Glucose (C) N.D. N.D. +0.5 N.D. -1.3
carbon source D-Galactose (C) N.D. N.D. +0.8 N.D. -1.4
carbon source D-Mannose (C) N.D. N.D. +0.8 N.D. -1.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. +1.1 N.D. -1.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. +1.3 N.D. -0.5
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