Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS11285 and HMPREF1058_RS11280 overlap by 1 nucleotidesHMPREF1058_RS11280 and HMPREF1058_RS11275 are separated by 337 nucleotidesHMPREF1058_RS11275 and HMPREF1058_RS11270 are separated by 37 nucleotidesHMPREF1058_RS11270 and HMPREF1058_RS11265 are separated by 185 nucleotides HMPREF1058_RS11285: HMPREF1058_RS11285 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 408,642 to 409,043 _RS11285 HMPREF1058_RS11280: HMPREF1058_RS11280 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 409,043 to 410,413 _RS11280 HMPREF1058_RS11275: HMPREF1058_RS11275 - hypothetical protein, at 410,751 to 411,101 _RS11275 HMPREF1058_RS11270: HMPREF1058_RS11270 - acetyl-CoA hydrolase/transferase family protein, at 411,139 to 412,632 _RS11270 HMPREF1058_RS11265: HMPREF1058_RS11265 - glycoside hydrolase family 3 C-terminal domain-containing protein, at 412,818 to 415,412 _RS11265
Group Condition HMPREF1058_RS11285 HMPREF1058_RS11280 HMPREF1058_RS11275 HMPREF1058_RS11270 HMPREF1058_RS11265
carbon source D-Galactose 20 mM (C) -0.1 -1.3 -2.9 -5.7 -0.1
carbon source D-Galactose 20 mM (C) -0.1 -1.2 -2.1 -5.5 -0.2
carbon source D-Galactose 20 mM (C) -0.2 -1.0 -2.2 -5.2 +0.0
carbon source Beta-Lactose 20 mM (C) -0.1 -0.4 -1.3 -6.3 -0.1
carbon source L-Arabinose 20 mM (C) -0.0 -1.0 -1.1 -5.8 +0.1
carbon source D-Xylose 20 mM (C) -0.1 -0.5 -1.3 -5.9 -0.0
carbon source Beta-Lactose 20 mM (C) -0.0 -0.7 -1.0 -6.0 -0.0
carbon source a-Cyclodextrin (C) -0.0 +0.2 -1.9 -5.8 -0.1
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.0 -0.4 -1.5 -5.7 -0.0
carbon source Beta-Lactose 20 mM (C) -0.0 -0.6 -1.1 -5.9 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.1 -1.5 -1.4 -3.9 -0.6
carbon source D-Xylose 20 mM (C) -0.0 -0.3 -0.9 -6.2 -0.0
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.0 -0.3 -1.2 -5.8 -0.1
carbon source a-Cyclodextrin (C) +0.2 +0.2 -2.5 -5.3 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.0 -1.4 -1.5 -4.1 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.1 -2.4 -0.1 -5.0 +0.1
carbon source D-Glucose 5 mg/ml (C) -0.1 -0.4 -1.6 -5.3 +0.2
carbon source Arabinan from sugar beet 5mg/ml (C) -0.1 -0.5 -0.7 -6.0 +0.2
carbon source D-Xylose (C) +0.0 +0.4 -2.4 -4.8 -0.1
carbon source Arabinan from sugar beet 5mg/ml (C) +0.2 -0.6 -0.5 -6.1 +0.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.1 -0.4 -2.3 -4.2 +0.4
carbon source NAG 20 mM (C) +0.2 -1.3 +0.3 -5.8 -0.1
carbon source D-Glucose 20 mM (C) -0.2 -1.9 +0.6 -4.8 +0.1
carbon source NAG 20 mM (C) +0.1 -1.8 +0.8 -5.0 +0.0
carbon source D-Mannose 20 mM (C) -0.2 -1.9 +0.8 -4.6 +0.0
carbon source D-Glucose 20 mM (C) -0.1 -1.7 +1.6 -5.2 -0.1
carbon source D-Mannose 20 mM (C) +0.1 -1.6 +1.1 -4.8 +0.0
carbon source D-Glucose 20 mM (C) +0.0 -1.6 +1.2 -4.8 +0.1
carbon source Sucrose 20 mM (C) +0.1 -2.1 +1.1 -4.2 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.4 -0.4 +2.7 +4.0 +0.3
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