Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS10800 and HMPREF1058_RS10795 are separated by 245 nucleotidesHMPREF1058_RS10795 and HMPREF1058_RS10790 overlap by 1 nucleotidesHMPREF1058_RS10790 and HMPREF1058_RS10785 are separated by 320 nucleotidesHMPREF1058_RS10785 and HMPREF1058_RS10780 overlap by 29 nucleotides HMPREF1058_RS10800: HMPREF1058_RS10800 - RNA polymerase sigma-70 factor, at 559,961 to 560,470 _RS10800 HMPREF1058_RS10795: HMPREF1058_RS10795 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 560,716 to 562,419 _RS10795 HMPREF1058_RS10790: HMPREF1058_RS10790 - SusC/RagA family TonB-linked outer membrane protein, at 562,419 to 565,460 _RS10790 HMPREF1058_RS10785: HMPREF1058_RS10785 - RNA polymerase sigma-70 factor, at 565,781 to 566,326 _RS10785 HMPREF1058_RS10780: HMPREF1058_RS10780 - phosphoribosylglycinamide formyltransferase, at 566,298 to 566,876 _RS10780
Group Condition HMPREF1058_RS10800 HMPREF1058_RS10795 HMPREF1058_RS10790 HMPREF1058_RS10785 HMPREF1058_RS10780
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.6 -0.9 +0.0 -0.6 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 -0.3 -0.4 -0.1 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.0 -1.7 +0.1 -0.2 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.3 -0.9 +0.1 -0.5 -0.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 -0.9 -0.4 -0.4 +0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 -0.9 -0.3 -0.4 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.3 -2.1 +0.1 -0.0 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.2 -1.8 +0.2 +0.1 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 +0.2 -1.6 +0.1 +0.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +0.1 -1.3 +0.3 -0.0 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 +0.3 -1.4 -0.0 -0.1 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 +0.2 -1.7 +0.2 +0.0 +0.6
carbon source Galactose 1-phosphate dipotassium salt (C) -0.4 -0.4 +0.4 +0.5 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2 -0.0 -0.9 +0.3 +0.2 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.0 -0.8 +0.1 +0.3 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.1 -0.9 +0.4 +0.1 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.1 -0.7 +0.1 +0.2 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.2 -0.7 +0.2 +0.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 +0.5 -0.2 +0.7 -0.1 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.5 -0.7 +0.3 +0.2 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.3 -0.5 +0.3 +0.3 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.2 -0.4 +0.3 +0.3 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 +0.5 -0.2 +0.7 +0.3 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.8 -0.1 +0.8 +0.0 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.7 -0.1 +0.6 +0.2 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.5 -0.4 +0.3 +0.4 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.5 +0.0 +1.0 +0.3 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +1.0 -0.1 +0.6 +0.3 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.7 -0.1 +0.9 +0.4 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.9 -0.1 +1.2 +0.5 -0.5
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