Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS10675 and HMPREF1058_RS10670 are separated by 489 nucleotidesHMPREF1058_RS10670 and HMPREF1058_RS10665 are separated by 71 nucleotidesHMPREF1058_RS10665 and HMPREF1058_RS10660 are separated by 25 nucleotidesHMPREF1058_RS10660 and HMPREF1058_RS10655 are separated by 108 nucleotides HMPREF1058_RS10675: HMPREF1058_RS10675 - DUF4221 family protein, at 605,417 to 606,115 _RS10675 HMPREF1058_RS10670: HMPREF1058_RS10670 - DUF4221 family protein, at 606,605 to 607,303 _RS10670 HMPREF1058_RS10665: HMPREF1058_RS10665 - hypothetical protein, at 607,375 to 607,659 _RS10665 HMPREF1058_RS10660: HMPREF1058_RS10660 - DUF1573 domain-containing protein, at 607,685 to 608,422 _RS10660 HMPREF1058_RS10655: HMPREF1058_RS10655 - hydroxymyristoyl-ACP dehydratase, at 608,531 to 608,911 _RS10655
Group Condition HMPREF1058_RS10675 HMPREF1058_RS10670 HMPREF1058_RS10665 HMPREF1058_RS10660 HMPREF1058_RS10655
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.2 +0.4 -0.1 +0.4 -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.1 +0.0 +0.4 +0.3 -1.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 -0.1 -0.7 -0.1 +0.8
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.6 -0.2 -0.3 -0.1 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 +0.1 +0.5 -0.4 -0.2 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.1 +0.3 +0.3 +0.2 -1.2
carbon source D-Mannose 20 mM (C) -0.3 +0.2 +0.4 -0.3 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 -0.2 +0.4 -0.5 +0.3 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.3 +0.2 +0.8 +0.4 -1.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -0.1 +0.1 +0.9 -0.4 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.2 +0.2 +0.7 +0.2 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +0.3 +0.0 +0.6 +0.2 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.3 +0.1 +0.8 +0.5 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.2 +0.5 +0.7 +0.1 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.1 +0.2 +0.8 -0.1 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +0.3 +0.1 +1.1 -0.1 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.3 +0.4 +0.4 -0.2 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.4 +0.4 +0.5 -0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.2 +0.5 +1.2 -0.1 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.4 +0.4 +0.5 -0.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.3 +0.3 +0.9 +0.1 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.4 +0.6 +0.5 +0.2 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.6 +0.3 +0.5 +0.3 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.2 +0.3 +1.2 -0.0 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.4 +0.4 +0.7 +0.2 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.5 +0.3 +0.6 +0.2 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.4 +0.5 +1.3 +0.1 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.2 +0.4 +1.2 -0.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.3 +0.4 +1.0 +0.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.3 +0.4 +0.9 +0.3 +0.2
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