Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS10665 and HMPREF1058_RS10660 are separated by 25 nucleotidesHMPREF1058_RS10660 and HMPREF1058_RS10655 are separated by 108 nucleotidesHMPREF1058_RS10655 and HMPREF1058_RS10650 are separated by 1 nucleotidesHMPREF1058_RS10650 and HMPREF1058_RS10645 are separated by 12 nucleotides HMPREF1058_RS10665: HMPREF1058_RS10665 - hypothetical protein, at 607,375 to 607,659 _RS10665 HMPREF1058_RS10660: HMPREF1058_RS10660 - DUF1573 domain-containing protein, at 607,685 to 608,422 _RS10660 HMPREF1058_RS10655: HMPREF1058_RS10655 - hydroxymyristoyl-ACP dehydratase, at 608,531 to 608,911 _RS10655 HMPREF1058_RS10650: HMPREF1058_RS10650 - hypothetical protein, at 608,913 to 609,455 _RS10650 HMPREF1058_RS10645: HMPREF1058_RS10645 - ATP-binding protein, at 609,468 to 611,042 _RS10645
Group Condition HMPREF1058_RS10665 HMPREF1058_RS10660 HMPREF1058_RS10655 HMPREF1058_RS10650 HMPREF1058_RS10645
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.2 -0.1 +0.3 -1.3 -0.8
carbon source D-Galacturonic Acid 20 mM (C) +0.5 +0.1 -0.4 -0.9 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.1 +0.2 +0.1 -1.3 -0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 -0.2 -0.0 -1.5 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.1 +0.4 -1.7 +0.4 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.5 -0.1 +0.3 -0.9 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.5 +0.3 +0.0 -0.9 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.4 -0.2 +0.4 -0.7 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.9 +0.1 +0.0 -1.5 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +1.0 +0.3 +0.1 -1.5 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +1.2 -0.0 +0.1 -1.0 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +1.2 -0.0 +0.0 -0.5 -0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.9 +0.3 +0.2 -1.1 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.3 +0.2 -1.2 +0.6 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 +0.2 +0.2 -0.8 +0.7 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.5 -0.2 -0.1 +0.8 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.4 +0.3 -1.1 +0.6 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.8 +0.4 -1.8 +0.7 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.9 -0.4 -0.4 +0.5 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.7 +0.2 -0.8 +0.9 +0.3
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.7 -0.1 +0.8 +0.9 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.7 +0.1 -0.7 +0.9 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.8 +0.5 -1.0 +0.8 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.8 -0.1 -0.3 +0.4 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +0.6 +0.2 -0.6 +0.6 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +1.1 -0.1 -0.3 +0.4 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 +0.7 +0.2 -0.3 +0.8 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +1.3 +0.1 -0.4 +0.5 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +1.1 -0.2 +0.0 +0.7 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +1.2 -0.1 -0.5 +0.6 +0.9
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