Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS10640 and HMPREF1058_RS10635 are separated by 743 nucleotidesHMPREF1058_RS10635 and HMPREF1058_RS10630 are separated by 50 nucleotidesHMPREF1058_RS10630 and HMPREF1058_RS10625 are separated by 113 nucleotidesHMPREF1058_RS10625 and HMPREF1058_RS10620 are separated by 3 nucleotides HMPREF1058_RS10640: HMPREF1058_RS10640 - outer membrane lipoprotein carrier protein LolA, at 611,205 to 611,840 _RS10640 HMPREF1058_RS10635: HMPREF1058_RS10635 - polysaccharide deacetylase family protein, at 612,584 to 613,276 _RS10635 HMPREF1058_RS10630: HMPREF1058_RS10630 - KilA-N domain-containing protein, at 613,327 to 614,181 _RS10630 HMPREF1058_RS10625: HMPREF1058_RS10625 - beta-ketoacyl synthase chain length factor, at 614,295 to 615,248 _RS10625 HMPREF1058_RS10620: HMPREF1058_RS10620 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 615,252 to 616,442 _RS10620
Group Condition HMPREF1058_RS10640 HMPREF1058_RS10635 HMPREF1058_RS10630 HMPREF1058_RS10625 HMPREF1058_RS10620
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.0 -0.9 -0.9 -1.6 -1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -1.3 -2.8 -0.5 -0.2 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -1.4 -2.2 -0.5 -0.5 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.4 -0.6 -0.8 -1.6 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.0 -0.7 -0.7 -1.2 -0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -1.0 -1.7 -0.8 -0.7 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.1 -0.5 -0.5 -1.5 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 +0.3 -0.4 -0.5 -1.3 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 +0.4 -0.2 -0.4 -1.1 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -0.6 -1.0 -0.6 -0.5 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -0.5 -0.8 -0.4 -0.7 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.8 -0.2 -0.6 -1.2 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5 +0.4 -0.1 -0.4 -0.8 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.3 -0.7 -0.7 -0.1 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.6 +0.3 -0.4 -1.1 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +0.7 +0.0 -0.4 -1.0 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.3 -0.5 -0.5 -0.6 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 +0.8 +0.2 -0.3 -0.8 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 +0.7 +0.5 -0.3 -0.8 -0.5
carbon source Polygalacturonic 5 mg/ml (C) -1.0 +0.7 +0.4 -0.1 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 +0.6 +0.5 -0.2 -0.7 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 +0.6 +0.4 -0.2 -0.6 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.6 +0.8 -0.2 -0.6 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 +0.6 +0.9 -0.1 -0.7 -0.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.5 -0.3 +0.9 +0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.3 +0.6 -0.3 -0.3 +0.5
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.2 +0.2 +0.8 +0.5 +0.6
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.2 -0.1 +1.1 +0.8 +0.5
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.1 +0.3 +0.2 +0.1 +0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.1 +0.3 +0.4 +0.3 +0.1
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HMPREF1058_RS10640
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HMPREF1058_RS10620
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