Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 297 experiments or choose conditions or try the comparative fitness browser

500 ntHMPREF1058_RS10405 and HMPREF1058_RS10400 are separated by 37 nucleotidesHMPREF1058_RS10400 and HMPREF1058_RS10395 are separated by 1 nucleotidesHMPREF1058_RS10395 and HMPREF1058_RS10390 overlap by 11 nucleotidesHMPREF1058_RS10390 and HMPREF1058_RS10385 overlap by 4 nucleotides HMPREF1058_RS10405: HMPREF1058_RS10405 - hypothetical protein, at 676,706 to 678,133 _RS10405 HMPREF1058_RS10400: HMPREF1058_RS10400 - hypothetical protein, at 678,171 to 678,932 _RS10400 HMPREF1058_RS10395: HMPREF1058_RS10395 - hypothetical protein, at 678,934 to 679,671 _RS10395 HMPREF1058_RS10390: HMPREF1058_RS10390 - hypothetical protein, at 679,661 to 680,629 _RS10390 HMPREF1058_RS10385: HMPREF1058_RS10385 - tape measure protein, at 680,626 to 685,464 _RS10385
Group Condition HMPREF1058_RS10405 HMPREF1058_RS10400 HMPREF1058_RS10395 HMPREF1058_RS10390 HMPREF1058_RS10385
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 -0.4 -0.6 -0.5 -0.3 -0.5
carbon source D-Glucose 5 mg/ml (C) -0.2 -0.3 -0.6 -1.0 -0.3
carbon source D-Mannose 20 mM (C) -0.3 -0.5 -0.8 -0.6 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.1 -0.3 -0.8 -0.7 -0.3
carbon source D-Glucose 5 mg/ml (C) -0.3 -0.4 -0.4 -1.0 -0.2
carbon source D-Fructose 20 mM (C) -0.2 -0.4 -0.8 -0.6 -0.2
carbon source D-Galactose 20 mM (C) -0.1 -0.5 -1.1 -0.4 -0.0
carbon source D-Glucose 20 mM (C) -0.2 -0.6 -0.5 -0.6 -0.1
carbon source D-Mannose 20 mM (C) -0.2 -0.5 -0.4 -0.6 -0.2
carbon source D-Mannose 20 mM (C) -0.3 -0.5 -0.3 -0.6 -0.2
carbon source D-Glucose 20 mM (C) -0.2 -0.6 -0.3 -0.7 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 -0.3 -1.0 -0.2 -0.4
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.4 -0.3 -0.1 -0.8 -0.3
carbon source D-Glucose 20 mM (C) -0.2 -0.4 -0.6 -0.6 -0.0
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 -0.2 -0.5 -0.6 -0.3
carbon source D-Glucose 20 mM (C) -0.1 -0.4 -0.5 -0.6 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.1 -0.2 -0.9 -0.2 -0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 -0.5 -0.4 -0.4 -0.3
carbon source Fructooligosaccharides (FOS) 5 mg/ml (C) -0.2 -0.5 -0.2 -0.5 -0.1
carbon source D-Mannose 20 mM (C) -0.2 -0.5 -0.0 -0.7 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.3 -0.5 -0.1 -0.4 -0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.2 -0.3 -0.3 -0.5 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -0.3 -0.4 -0.5 -0.2 -0.1
carbon source NAG 20 mM (C) -0.2 -0.5 -0.3 -0.5 -0.0
carbon source D-Fructose 20 mM (C) -0.1 -0.3 -0.5 -0.4 -0.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.2 -0.1 -0.3 -0.6 -0.2
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.1 +0.5 -0.6 -0.4 -0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 +0.3 -0.9 +0.2 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.2 +0.4 +0.3 +0.3 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.4 +0.3 +0.6 +0.6 +0.4
remove
HMPREF1058_RS10405
plot		 remove
HMPREF1058_RS10400
plot		 remove
HMPREF1058_RS10395		 remove
HMPREF1058_RS10390
plot		 remove
HMPREF1058_RS10385
plot