Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS10235 and HMPREF1058_RS10230 overlap by 14 nucleotidesHMPREF1058_RS10230 and HMPREF1058_RS10225 are separated by 103 nucleotidesHMPREF1058_RS10225 and HMPREF1058_RS10220 are separated by 36 nucleotidesHMPREF1058_RS10220 and HMPREF1058_RS10215 overlap by 23 nucleotides HMPREF1058_RS10235: HMPREF1058_RS10235 - phage portal protein, at 704,011 to 705,438 _RS10235 HMPREF1058_RS10230: HMPREF1058_RS10230 - hypothetical protein, at 705,425 to 705,892 _RS10230 HMPREF1058_RS10225: HMPREF1058_RS10225 - hypothetical protein, at 705,996 to 706,235 _RS10225 HMPREF1058_RS10220: HMPREF1058_RS10220 - hypothetical protein, at 706,272 to 706,883 _RS10220 HMPREF1058_RS10215: HMPREF1058_RS10215 - DUF4417 domain-containing protein, at 706,861 to 707,979 _RS10215
Group Condition HMPREF1058_RS10235 HMPREF1058_RS10230 HMPREF1058_RS10225 HMPREF1058_RS10220 HMPREF1058_RS10215
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +0.1 +2.2 -1.7 +1.0 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.6 +2.6 -3.2 +0.6 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.8 +2.7 -3.1 +0.6 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 +0.3 +3.2 -1.7 +0.2 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.7 +3.5 -3.1 +0.7 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.5 +5.0 -2.8 -0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.3 +3.6 -0.2 -0.7 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.4 +3.6 -1.5 +0.1 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 +0.6 +3.3 -1.6 -0.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.4 +4.2 -2.1 +0.4 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.5 +2.7 -0.9 +1.1 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 +0.5 +3.9 -1.7 +0.4 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.3 +4.7 -1.4 -0.2 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.4 +4.4 -1.1 +0.1 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.6 +4.8 -1.3 -0.4 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.4 +4.0 -1.2 +0.2 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.4 +4.7 -0.8 -0.5 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.2 +4.5 -1.6 +0.3 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.3 +4.3 -1.0 +0.2 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +1.0 +4.1 -1.5 +0.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +0.5 +4.1 -1.9 +1.2 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.4 +5.0 -1.3 +0.1 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.4 +4.7 -1.5 +0.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 +0.7 +3.8 -1.1 +0.7 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.3 +4.5 -0.2 +0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.7 +5.5 -2.5 +1.0 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.5 +5.5 -0.9 -0.0 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.3 +5.3 -0.4 +0.2 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.3 +4.5 -0.1 +0.8 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.5 +4.6 +0.3 +0.9 -0.4
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HMPREF1058_RS10235
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HMPREF1058_RS10215
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