Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS10210 and HMPREF1058_RS10205 are separated by 26 nucleotidesHMPREF1058_RS10205 and HMPREF1058_RS10200 overlap by 4 nucleotidesHMPREF1058_RS10200 and HMPREF1058_RS10195 are separated by 4 nucleotidesHMPREF1058_RS10195 and HMPREF1058_RS10190 overlap by 4 nucleotides HMPREF1058_RS10210: HMPREF1058_RS10210 - hypothetical protein, at 707,981 to 708,391 _RS10210 HMPREF1058_RS10205: HMPREF1058_RS10205 - hypothetical protein, at 708,418 to 708,858 _RS10205 HMPREF1058_RS10200: HMPREF1058_RS10200 - hypothetical protein, at 708,855 to 709,247 _RS10200 HMPREF1058_RS10195: HMPREF1058_RS10195 - 3'-5' exonuclease, at 709,252 to 709,824 _RS10195 HMPREF1058_RS10190: HMPREF1058_RS10190 - ParB/RepB/Spo0J family partition protein, at 709,821 to 710,633 _RS10190
Group Condition HMPREF1058_RS10210 HMPREF1058_RS10205 HMPREF1058_RS10200 HMPREF1058_RS10195 HMPREF1058_RS10190
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 -1.3 -1.5 -0.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.3 -1.2 -1.2 -0.4 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 -0.4 -1.3 -0.3 -0.6 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.2 -1.4 -1.0 -0.7 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -0.2 -0.5 -1.3 -0.6 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.1 -0.6 -1.3 -0.5 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -0.1 -1.9 -0.6 -0.1 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.3 -1.0 -0.7 -0.2 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.1 -0.9 -0.9 -0.6 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.6 -0.5 -1.1 -0.2 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.1 -0.3 -1.3 -0.2 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 -0.3 -1.5 +0.1 +0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 -0.4 -1.3 -0.3 -0.0 +1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.2 -1.2 -0.3 -0.4 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -0.0 -0.7 -0.6 -0.2 +1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 -0.3 -0.3 -0.6 -0.4 +1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 -0.1 -0.8 -0.1 -0.4 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.0 +0.0 -0.8 -0.5 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.3 -0.3 -0.3 -0.4 +1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.2 -0.6 -0.9 -0.1 +1.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -0.0 -0.7 -0.3 -0.3 +1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 -0.2 -0.8 -0.1 -0.1 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.1 -1.2 +0.2 +0.2 +1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 -0.2 -0.1 -0.3 -0.3 +1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -0.2 +0.1 -0.2 -0.5 +1.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -0.2 -0.5 +0.1 -0.1 +2.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.0 +0.3 -0.2 -0.5 +1.9
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +0.4 +0.9 +0.3 +0.4 +0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.4 +1.3 +1.0 +0.2 +1.0
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.7 +1.2 +0.9 +0.2 +1.1
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HMPREF1058_RS10210
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HMPREF1058_RS10205
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HMPREF1058_RS10195
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HMPREF1058_RS10190
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