Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS10120	HMPREF1058_RS10115	HMPREF1058_RS10110	HMPREF1058_RS10105	HMPREF1058_RS10100
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.3	-0.2	-1.3	N.D.	-0.5
carbon source	polygalacturonic; autoclaved 2.5 mg/ml (C)	-0.2	-0.2	-0.4	N.D.	-1.3
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-1.0	+0.1	-1.4	N.D.	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	-0.2	+0.2	-1.6	N.D.	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2	+0.5	-0.2	-1.0	N.D.	-0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1	-0.4	+0.6	-0.6	N.D.	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	+0.1	+0.9	-0.3	N.D.	-1.6
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	-0.5	-0.5	+0.9	N.D.	-0.6
carbon source	D-Galactose 20 mM (C)	-0.7	+0.5	+0.7	N.D.	-0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	-0.3	+0.2	-1.0	N.D.	+0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9	+0.5	-0.5	-0.7	N.D.	+0.5
carbon source	Pectin from apple; autoclaved 2.5 mg/ml (C)	+0.6	-0.1	-1.1	N.D.	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7	+1.0	-0.1	-1.1	N.D.	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7	+0.6	-0.7	-0.5	N.D.	+0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	+0.4	+0.8	-0.2	N.D.	-1.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14	+0.7	-0.5	+0.5	N.D.	-0.4
carbon source	Galactose 1-phosphate dipotassium salt (C)	+1.0	-0.1	+0.5	N.D.	-0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9	+0.8	-0.3	-0.5	N.D.	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7	+1.0	-0.6	-0.6	N.D.	+0.9
carbon source	Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)	+0.8	+0.1	-0.8	N.D.	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5	+0.9	+0.1	-0.8	N.D.	+0.5
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	-0.7	+0.3	+1.1	N.D.	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7	+0.8	-0.4	-0.2	N.D.	+0.8
carbon source	D-Glucose (C)	+0.4	-0.1	-0.5	N.D.	+1.4
carbon source	Dextran 5 mg/ml (C)	+0.5	+0.3	-0.4	N.D.	+0.9
carbon source	Pectin from citrus peel (C)	+1.0	-0.0	-0.3	N.D.	+0.8
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9	+1.1	-0.1	-0.4	N.D.	+1.4
carbon source	NAG (C)	+0.5	-0.0	+0.5	N.D.	+1.1
carbon source	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)	+1.0	+0.2	+0.4	N.D.	+0.6
carbon source	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)	+0.6	+0.4	+0.1	N.D.	+1.1