Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS09965 and HMPREF1058_RS09960 overlap by 4 nucleotidesHMPREF1058_RS09960 and HMPREF1058_RS09955 are separated by 45 nucleotidesHMPREF1058_RS09955 and HMPREF1058_RS20750 are separated by 117 nucleotidesHMPREF1058_RS20750 and HMPREF1058_RS09945 are separated by 50 nucleotides HMPREF1058_RS09965: HMPREF1058_RS09965 - DUF3873 domain-containing protein, at 754,959 to 755,192 _RS09965 HMPREF1058_RS09960: HMPREF1058_RS09960 - hypothetical protein, at 755,189 to 755,434 _RS09960 HMPREF1058_RS09955: HMPREF1058_RS09955 - hypothetical protein, at 755,480 to 755,788 _RS09955 HMPREF1058_RS20750: HMPREF1058_RS20750 - hypothetical protein, at 755,906 to 756,127 _RS20750 HMPREF1058_RS09945: HMPREF1058_RS09945 - hypothetical protein, at 756,178 to 757,161 _RS09945
Group Condition HMPREF1058_RS09965 HMPREF1058_RS09960 HMPREF1058_RS09955 HMPREF1058_RS20750 HMPREF1058_RS09945
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -0.3 -0.4 -3.7 -0.4 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 +0.2 -0.2 -3.1 -0.2 -0.1
carbon source D-Glucosamine 6-phosphate (C) -0.3 -1.4 -1.5 -0.1 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.0 -0.7 -2.2 -0.2 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.0 -0.3 -2.4 +0.2 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +0.4 +0.2 -2.4 -0.6 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.6 -0.6 -2.8 +0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.4 +0.1 -2.5 -0.2 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.8 -0.8 -1.7 -0.5 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +0.5 -0.5 -1.7 -0.3 -0.1
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.5 -0.4 -1.7 +0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.1 +0.2 -2.5 +0.1 +0.0
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.4 -1.0 -1.3 -0.1 +0.1
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.8 -1.2 -0.5 +0.6 +0.0
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.5 -1.1 -1.0 -0.1 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.3 -0.3 -1.8 +0.4 +0.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.4 -0.8 -0.9 +0.8 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.6 +0.9 -2.1 +0.3 +0.1
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.3 +0.3 -1.2 +0.7 +0.5
carbon source D-Galactose (C) +0.2 -1.3 +1.3 +0.1 -0.0
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.4 +0.2 -1.0 +1.2 +0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.0 -1.2 +1.7 -0.4 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.5 +1.0 -1.2 +0.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 -0.2 -0.6 +1.7 +0.7 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.1 -0.0 +2.2 -0.1 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 -0.3 +0.7 +1.6 -0.3 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.6 -0.3 +1.1 +0.7 -0.1
carbon source D-Galactose 20 mM (C) -0.7 +1.2 +1.2 +0.5 +0.0
carbon source D-Galactose 20 mM (C) +0.1 +1.1 +1.6 -0.5 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.5 -0.4 +2.0 +0.8 +0.3
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