Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS09915 and HMPREF1058_RS09910 overlap by 32 nucleotidesHMPREF1058_RS09910 and HMPREF1058_RS09905 are separated by 6 nucleotidesHMPREF1058_RS09905 and HMPREF1058_RS09900 are separated by 204 nucleotidesHMPREF1058_RS09900 and HMPREF1058_RS09895 are separated by 3 nucleotides HMPREF1058_RS09915: HMPREF1058_RS09915 - conjugative transposon protein TraM, at 760,799 to 762,175 _RS09915 HMPREF1058_RS09910: HMPREF1058_RS09910 - DUF3989 domain-containing protein, at 762,144 to 762,464 _RS09910 HMPREF1058_RS09905: HMPREF1058_RS09905 - conjugative transposon protein TraK, at 762,471 to 763,094 _RS09905 HMPREF1058_RS09900: HMPREF1058_RS09900 - conjugative transposon protein TraJ, at 763,299 to 764,303 _RS09900 HMPREF1058_RS09895: HMPREF1058_RS09895 - DUF4141 domain-containing protein, at 764,307 to 764,936 _RS09895
Group Condition HMPREF1058_RS09915 HMPREF1058_RS09910 HMPREF1058_RS09905 HMPREF1058_RS09900 HMPREF1058_RS09895
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -0.9 -0.5 -0.9 -0.6 +0.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 +0.2 -0.7 -1.4 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 -0.2 +0.2 -1.9 -0.2 +0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.6 -0.1 -1.6 -0.9 +0.4
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.8 +0.4 +1.5 -0.8 -1.0
carbon source Pectin from citrus peel (C) -0.4 +1.6 -1.1 -0.1 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.3 +1.2 -0.9 -1.0 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.4 +1.0 -1.1 +0.3 +0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.0 -0.4 +1.3 -1.1 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -0.1 +1.3 -0.9 +0.5 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.7 +1.1 -1.2 -0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.8 +0.9 -0.6 +1.0 +0.7
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.3 -1.1 +2.6 -0.1 -0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 +2.6 -1.2 -0.9 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.9 +1.0 -0.8 +0.0 +1.0
carbon source D-Mannose (C) +0.4 -0.4 +0.7 +0.7 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 +0.5 +0.4 +1.0 -0.4 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 +0.7 +1.1 +0.7 -0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.0 +1.1 +0.9 -0.1 +0.6
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.4 -0.5 +2.1 +0.9 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +1.1 +1.0 -0.2 -0.0 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 +0.6 +0.6 +1.0 -0.2 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.6 +1.6 +0.6 -0.4 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day3 +0.5 +0.3 +1.1 +0.3 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +0.7 +1.0 +0.9 +0.1 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.2 +0.4 +1.6 -0.1 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.4 +1.0 +0.8 +0.2 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +1.0 +1.3 -0.3 +0.4 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.8 +1.1 +0.7 +0.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 +0.6 +0.9 +0.8 +1.1 +0.6
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