Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS09880	HMPREF1058_RS09875	HMPREF1058_RS09870	HMPREF1058_RS09865	HMPREF1058_RS09860
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-2.3	N.D.	-0.3	-1.8	-1.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1	-1.2	N.D.	+0.4	-2.5	-0.4
carbon source	Galactose 1-phosphate dipotassium salt (C)	-0.7	N.D.	-0.5	-0.9	-1.6
carbon source	Dextran 5 mg/ml (C)	-0.1	N.D.	-0.7	-1.4	-1.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	-0.7	N.D.	-0.7	-2.5	+0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7	-0.5	N.D.	-0.7	-1.8	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	-0.8	N.D.	-0.2	-1.8	+0.9
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	+0.1	N.D.	+0.2	-2.4	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	-1.9	N.D.	+0.4	-0.9	+1.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3	-1.1	N.D.	-0.3	-0.5	+1.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4	+0.4	N.D.	+0.4	-2.4	+1.6
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	-1.8	N.D.	+0.2	-0.9	+3.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6	-0.2	N.D.	-0.2	-1.2	+2.2
carbon source	D-Glucose (C)	+0.8	N.D.	+0.1	+1.3	-1.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	-0.4	N.D.	+0.1	-0.8	+2.2
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	-0.2	N.D.	+0.0	-2.1	+3.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5	-0.6	N.D.	-0.4	-0.0	+2.3
carbon source	Arabinan from sugar beet 5mg/ml (C)	-1.0	N.D.	-0.0	+1.1	+1.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5	-0.1	N.D.	+0.3	-0.8	+2.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9	-0.9	N.D.	+0.4	+0.1	+2.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	-0.0	N.D.	+0.0	-0.9	+2.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	-1.0	N.D.	-0.0	+0.7	+2.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4	-0.6	N.D.	-0.1	+0.9	+1.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	-0.8	N.D.	-0.0	+1.2	+2.0
carbon source	(+)-Arabinogalactan; filtered 2.5 mg/ml (C)	-0.5	N.D.	+0.2	+0.3	+2.5
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	+0.3	N.D.	-0.5	+0.2	+2.6
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+1.2	N.D.	+0.6	-0.4	+1.5
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	-0.1	N.D.	-0.3	+0.4	+3.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	+0.1	N.D.	-0.4	+0.9	+2.5
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	+1.4	N.D.	-0.2	+0.6	+2.4