Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS09875 and HMPREF1058_RS09870 overlap by 4 nucleotidesHMPREF1058_RS09870 and HMPREF1058_RS09865 are separated by 19 nucleotidesHMPREF1058_RS09865 and HMPREF1058_RS09860 are separated by 2 nucleotidesHMPREF1058_RS09860 and HMPREF1058_RS09855 are separated by 2 nucleotides HMPREF1058_RS09875: HMPREF1058_RS09875 - hypothetical protein, at 768,747 to 769,466 _RS09875 HMPREF1058_RS09870: HMPREF1058_RS09870 - DUF3408 domain-containing protein, at 769,463 to 769,705 _RS09870 HMPREF1058_RS09865: HMPREF1058_RS09865 - DUF3408 domain-containing protein, at 769,725 to 770,072 _RS09865 HMPREF1058_RS09860: HMPREF1058_RS09860 - DUF3408 domain-containing protein, at 770,075 to 770,515 _RS09860 HMPREF1058_RS09855: HMPREF1058_RS09855 - ParA family protein, at 770,518 to 771,567 _RS09855
Group Condition HMPREF1058_RS09875 HMPREF1058_RS09870 HMPREF1058_RS09865 HMPREF1058_RS09860 HMPREF1058_RS09855
carbon source Dextran 5 mg/ml (C) N.D. -0.7 -1.4 -1.4 -0.4
carbon source Galactose 1-phosphate dipotassium salt (C) N.D. -0.5 -0.9 -1.6 -0.8
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.3 -1.8 -1.0 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 N.D. +0.4 -2.5 -0.4 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 N.D. -0.7 -2.5 +0.6 +0.5
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. +0.0 +0.8 -1.1 -1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 N.D. -0.7 -1.8 +0.5 +0.5
carbon source Galactose 1-phosphate dipotassium salt (C) N.D. -0.3 +0.9 -1.1 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 N.D. +0.2 -2.4 +0.7 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 N.D. -0.2 -1.8 +0.9 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 N.D. +0.4 -2.4 +1.6 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 N.D. -0.2 -1.2 +2.2 -0.6
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. -0.2 -0.5 +2.0 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 N.D. -0.0 -0.2 +1.8 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 N.D. -0.1 -0.4 +2.2 -0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 N.D. -0.0 -1.1 +1.5 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 N.D. +0.0 -0.9 +2.6 -0.9
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) N.D. +0.0 -2.1 +3.5 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 N.D. +0.1 -0.8 +2.2 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 N.D. +0.3 -0.8 +2.3 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 N.D. -0.4 -0.0 +2.3 -0.5
carbon source (+)-Arabinogalactan 5 mg/ml (C) N.D. -0.5 +0.2 +2.6 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. -0.4 +0.9 +2.5 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 N.D. -0.1 +0.9 +1.8 -0.5
carbon source (+)-Arabinogalactan 5 mg/ml (C) N.D. +0.2 -0.9 +3.0 +0.1
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) N.D. -0.2 +0.6 +2.4 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 N.D. -0.0 +1.2 +2.0 -0.6
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) N.D. +0.2 +0.3 +2.5 -0.3
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) N.D. -0.3 +0.4 +3.0 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 N.D. -0.0 +0.7 +2.3 +0.4
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