Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS09795 and HMPREF1058_RS09790 are separated by 162 nucleotidesHMPREF1058_RS09790 and HMPREF1058_RS09785 are separated by 60 nucleotidesHMPREF1058_RS09785 and HMPREF1058_RS0119690 are separated by 20 nucleotidesHMPREF1058_RS0119690 and HMPREF1058_RS09780 are separated by 3 nucleotides HMPREF1058_RS09795: HMPREF1058_RS09795 - DUF1896 domain-containing protein, at 794,094 to 794,546 _RS09795 HMPREF1058_RS09790: HMPREF1058_RS09790 - type IA DNA topoisomerase, at 794,709 to 796,796 _RS09790 HMPREF1058_RS09785: HMPREF1058_RS09785 - DUF3945 domain-containing protein, at 796,857 to 798,428 _RS09785 HMPREF1058_RS0119690: HMPREF1058_RS0119690 - helix-turn-helix domain-containing protein, at 798,449 to 798,799 _RS0119690 HMPREF1058_RS09780: HMPREF1058_RS09780 - helix-turn-helix domain-containing protein, at 798,803 to 799,165 _RS09780
Group Condition HMPREF1058_RS09795 HMPREF1058_RS09790 HMPREF1058_RS09785 HMPREF1058_RS0119690 HMPREF1058_RS09780
carbon source Sucrose 20 mM (C) -1.1 -0.6 -0.9 -0.5 N.D.
carbon source D-Mannose (C) -2.5 -0.4 -0.2 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.5 +0.3 -2.1 -0.5 N.D.
carbon source Amylose from potato 5 mg/ml (C) -2.1 +0.1 -0.1 -0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.2 +0.4 -1.9 -1.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.0 +0.1 -1.9 -0.4 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.1 +0.9 -0.8 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.3 +0.2 -1.4 -0.8 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.9 +0.4 -1.1 -0.2 N.D.
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.7 +0.1 -1.2 +0.4 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.1 -0.2 +0.6 -1.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.6 +0.1 -1.9 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.4 +0.2 -1.8 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.9 +0.3 -1.7 -0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 +0.2 +0.2 -1.6 +0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.6 +0.3 -1.7 +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.2 +0.4 -1.5 +0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.7 +0.4 -0.9 -0.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.3 +0.6 -0.5 -0.9 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.7 +0.8 -0.4 -1.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.5 +0.3 -1.8 +0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 +0.8 +0.4 -0.8 -0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +1.0 +0.0 -1.5 +0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.7 +0.7 -1.2 +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +1.1 -0.1 +0.7 -1.3 N.D.
carbon source D-Mannose 20 mM (C) -0.3 -0.7 +0.9 +0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +1.1 +0.1 +0.5 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +0.4 +0.7 +0.6 -0.6 N.D.
carbon source D-Galactose 20 mM (C) +0.8 -0.8 +1.1 +0.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.9 +0.7 +0.8 +0.0 N.D.
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