Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS09725 and HMPREF1058_RS09720 overlap by 4 nucleotidesHMPREF1058_RS09720 and HMPREF1058_RS09715 are separated by 90 nucleotidesHMPREF1058_RS09715 and HMPREF1058_RS09710 are separated by 22 nucleotidesHMPREF1058_RS09710 and HMPREF1058_RS09705 overlap by 1 nucleotides HMPREF1058_RS09725: HMPREF1058_RS09725 - NAD/NADP octopine/nopaline dehydrogenase family protein, at 809,494 to 810,594 _RS09725 HMPREF1058_RS09720: HMPREF1058_RS09720 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 810,591 to 812,396 _RS09720 HMPREF1058_RS09715: HMPREF1058_RS09715 - hypothetical protein, at 812,487 to 813,317 _RS09715 HMPREF1058_RS09710: HMPREF1058_RS09710 - acyltransferase, at 813,340 to 814,365 _RS09710 HMPREF1058_RS09705: HMPREF1058_RS09705 - lipopolysaccharide biosynthesis protein, at 814,365 to 815,801 _RS09705
Group Condition HMPREF1058_RS09725 HMPREF1058_RS09720 HMPREF1058_RS09715 HMPREF1058_RS09710 HMPREF1058_RS09705
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -1.4 -1.1 -0.5 -0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -1.1 -1.0 -0.7 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -1.3 -0.9 -0.7 +0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 -0.9 -1.1 -0.5 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -1.0 -0.9 -0.6 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 -1.0 -1.1 -0.5 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 -1.2 -0.8 -0.3 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3 -0.9 -1.0 -0.3 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 -0.8 -1.1 -0.4 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 -0.7 -1.1 -0.4 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.9 -1.2 -0.2 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 -0.6 -1.0 -0.3 -0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -1.2 -0.9 -0.2 -0.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.7 -0.8 -0.6 -0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -0.8 -0.8 -0.4 -0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 -0.9 -0.8 -0.2 -0.2 N.D.
carbon source D-Glucose 20 mM (C) -1.1 -1.0 +0.1 +0.1 N.D.
carbon source D-Galactose 20 mM (C) -0.9 -1.3 +0.3 +0.3 N.D.
carbon source D-Galactose 20 mM (C) -0.5 -1.2 +0.3 +0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -0.6 -0.8 +0.6 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 -0.6 -0.7 +0.7 +0.2 N.D.
carbon source D-Glucose 5 mg/ml (C) -0.6 -0.7 +0.4 +0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.2 -0.4 +1.0 +0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.3 -0.4 +1.1 +0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.1 -0.4 +1.1 +0.6 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 -0.1 +1.0 +0.9 N.D.
carbon source D-Glucose (C) +0.4 +0.5 +0.8 +0.5 N.D.
carbon source D-Glucose (C) +0.8 +1.0 +1.0 +0.8 N.D.
carbon source Galactose 1-phosphate dipotassium salt (C) +3.0 +3.3 +1.7 +0.8 N.D.
carbon source Galactose 1-phosphate dipotassium salt (C) +2.9 +3.3 +1.7 +0.9 N.D.
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