Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS09565 and HMPREF1058_RS0119700 are separated by 54 nucleotidesHMPREF1058_RS0119700 and HMPREF1058_RS09560 are separated by 223 nucleotidesHMPREF1058_RS09560 and HMPREF1058_RS09555 are separated by 57 nucleotidesHMPREF1058_RS09555 and HMPREF1058_RS09550 are separated by 16 nucleotides HMPREF1058_RS09565: HMPREF1058_RS09565 - IS256 family transposase, at 844,102 to 845,334 _RS09565 HMPREF1058_RS0119700: HMPREF1058_RS0119700 - DNA-3-methyladenine glycosylase I, at 845,389 to 845,766 _RS0119700 HMPREF1058_RS09560: HMPREF1058_RS09560 - TonB-dependent receptor, at 845,990 to 848,377 _RS09560 HMPREF1058_RS09555: HMPREF1058_RS09555 - DUF4374 domain-containing protein, at 848,435 to 849,835 _RS09555 HMPREF1058_RS09550: HMPREF1058_RS09550 - PepSY domain-containing protein, at 849,852 to 851,048 _RS09550
Group Condition HMPREF1058_RS09565 HMPREF1058_RS0119700 HMPREF1058_RS09560 HMPREF1058_RS09555 HMPREF1058_RS09550
carbon source D-Mannose 20 mM (C) N.D. -0.3 -0.1 -0.1 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 N.D. -0.3 -0.1 -0.3 +0.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.8 +0.1 +0.3 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 N.D. -0.2 -0.3 +0.0 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 N.D. -0.3 -0.0 -0.1 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 N.D. -0.5 +0.1 -0.2 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 N.D. +0.2 +0.1 -0.4 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 N.D. +0.2 +0.0 -0.4 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 N.D. -0.3 +0.1 -0.0 +0.6
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) N.D. -0.4 -0.0 +0.2 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 N.D. +0.1 +0.2 -0.3 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. +0.1 -0.4 +0.0 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. +0.1 -0.3 +0.0 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 N.D. -0.3 +0.1 +0.2 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 N.D. -0.2 -0.1 +0.1 +0.7
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +0.5 -0.1 -0.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 N.D. +0.3 +0.0 -0.2 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 N.D. +0.5 +0.1 -0.3 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 N.D. +0.8 +0.2 -0.2 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.0 -0.1 +0.4 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. +0.2 -0.3 +0.1 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 N.D. +0.4 +0.2 -0.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 N.D. +0.5 +0.1 -0.3 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 N.D. -0.2 +0.3 +0.0 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 N.D. +0.7 +0.1 -0.3 +0.5
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +0.1 -0.1 +0.1 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 N.D. +0.5 +0.2 -0.2 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 N.D. +0.4 +0.2 -0.1 +0.5
carbon source D-Maltose 20 mM (C) N.D. +0.7 +0.2 +0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 N.D. +0.7 +0.1 +0.1 +0.5
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