Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS09225 and HMPREF1058_RS09220 are separated by 116 nucleotidesHMPREF1058_RS09220 and HMPREF1058_RS09215 are separated by 11 nucleotidesHMPREF1058_RS09215 and HMPREF1058_RS09210 are separated by 3 nucleotidesHMPREF1058_RS09210 and HMPREF1058_RS09205 are separated by 410 nucleotides HMPREF1058_RS09225: HMPREF1058_RS09225 - 30S ribosomal protein S11, at 912,417 to 912,806 _RS09225 HMPREF1058_RS09220: HMPREF1058_RS09220 - 30S ribosomal protein S4, at 912,923 to 913,528 _RS09220 HMPREF1058_RS09215: HMPREF1058_RS09215 - DNA-directed RNA polymerase subunit alpha, at 913,540 to 914,532 _RS09215 HMPREF1058_RS09210: HMPREF1058_RS09210 - 50S ribosomal protein L17, at 914,536 to 915,024 _RS09210 HMPREF1058_RS09205: HMPREF1058_RS09205 - hypothetical protein, at 915,435 to 915,860 _RS09205
Group Condition HMPREF1058_RS09225 HMPREF1058_RS09220 HMPREF1058_RS09215 HMPREF1058_RS09210 HMPREF1058_RS09205
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. N.D. N.D. -0.6
carbon source D-Galactose 20 mM (C) N.D. N.D. N.D. N.D. -0.6
carbon source D-Galacturonic Acid 20 mM (C) N.D. N.D. N.D. N.D. -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 N.D. N.D. N.D. N.D. -0.4
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. N.D. N.D. N.D. +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 N.D. N.D. N.D. N.D. +0.4
carbon source D-Galactose 2.5 mg/ml (C) N.D. N.D. N.D. N.D. +0.4
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) N.D. N.D. N.D. N.D. +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 N.D. N.D. N.D. N.D. +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 N.D. N.D. N.D. N.D. +0.5
carbon source D-Glucose 5 mg/ml (C) N.D. N.D. N.D. N.D. +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 N.D. N.D. N.D. N.D. +0.5
carbon source D-Galactose (C) N.D. N.D. N.D. N.D. +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3 N.D. N.D. N.D. N.D. +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 N.D. N.D. N.D. N.D. +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2 N.D. N.D. N.D. N.D. +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 N.D. N.D. N.D. N.D. +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 N.D. N.D. N.D. N.D. +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 N.D. N.D. N.D. N.D. +0.5
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. N.D. N.D. N.D. +0.5
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) N.D. N.D. N.D. N.D. +0.6
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. N.D. N.D. N.D. +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 N.D. N.D. N.D. N.D. +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. N.D. N.D. N.D. +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 N.D. N.D. N.D. N.D. +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 N.D. N.D. N.D. N.D. +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 N.D. N.D. N.D. N.D. +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 N.D. N.D. N.D. N.D. +0.7
carbon source D-Glucose (C) N.D. N.D. N.D. N.D. +0.7
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) N.D. N.D. N.D. N.D. +0.8
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