Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS09170 and HMPREF1058_RS09165 are separated by 334 nucleotidesHMPREF1058_RS09165 and HMPREF1058_RS09160 are separated by 10 nucleotidesHMPREF1058_RS09160 and HMPREF1058_RS09155 are separated by 122 nucleotidesHMPREF1058_RS09155 and HMPREF1058_RS09150 are separated by 128 nucleotides HMPREF1058_RS09170: HMPREF1058_RS09170 - DUF4252 domain-containing protein, at 921,140 to 921,634 _RS09170 HMPREF1058_RS09165: HMPREF1058_RS09165 - SDR family NAD(P)-dependent oxidoreductase, at 921,969 to 922,697 _RS09165 HMPREF1058_RS09160: HMPREF1058_RS09160 - O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase, at 922,708 to 923,985 _RS09160 HMPREF1058_RS09155: HMPREF1058_RS09155 - acyl-CoA thioesterase, at 924,108 to 924,557 _RS09155 HMPREF1058_RS09150: HMPREF1058_RS09150 - RagB/SusD family nutrient uptake outer membrane protein, at 924,686 to 926,251 _RS09150
Group Condition HMPREF1058_RS09170 HMPREF1058_RS09165 HMPREF1058_RS09160 HMPREF1058_RS09155 HMPREF1058_RS09150
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.3 -0.3 -0.3 +0.6 -4.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.1 -0.4 -0.2 +0.4 -3.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.3 -0.3 -0.1 +0.2 -2.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -0.0 -0.2 -0.1 +0.3 -2.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 +0.1 -0.3 -0.0 +0.2 -1.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.0 -0.2 -0.3 +0.6 -2.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 -0.1 -0.2 -0.0 +0.1 -1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5 +0.0 -0.4 -0.0 +0.2 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -0.0 -0.2 -0.1 +0.5 -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.0 -0.2 -0.1 +1.0 -2.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.2 -0.2 -0.2 +0.6 -1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 +0.2 -0.2 -0.2 +0.5 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.1 -0.2 +0.3 +0.3 -1.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.6 -0.0 +0.7 -0.9 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.2 -0.2 +0.2 +0.4 -1.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.5 -0.4 +0.1 +0.5 +0.3
carbon source 3'-fucosyllactose 10 mg/mL (C) +0.7 -0.1 -0.7 +0.0 +0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.5 +0.4 +0.9 -0.3 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 -0.2 +0.4 +0.7 +0.5 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.3 +0.3 +0.6 +0.4 -0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 +0.1 +1.6 -0.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.3 +0.1 +0.8 +0.5 +0.0
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.2 +0.2 +0.5 +0.6 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.1 +0.4 +0.7 +0.3 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.2 +0.6 +0.6 +0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.1 +0.4 +0.8 +0.4 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.3 +0.1 +1.0 -0.0 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.4 +0.3 +0.8 +0.2 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.3 +0.5 +0.7 +0.5 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.5 +0.3 +0.7 +0.3 +0.2
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HMPREF1058_RS09170
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HMPREF1058_RS09165
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HMPREF1058_RS09155
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HMPREF1058_RS09150
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